Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq63152 132 6e-26 seq157723 114 2e-20 seq164270 82.4 9e-11 >seq63152 Length=2952 Score = 132 bits (146), Expect = 6e-26 Identities = 211/303 (70%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 ||| ||||| || || || |||| ||||||| || |||| | ||| || ||| | || Sbjct 585 TAGCCCTATACCACCAGCACTTTTTGAGATTAGAGCACATCTTGTTAGAGTCTCAAATAT 526 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63610 | | || |||||||| | ||||| | ||||||||||| || | ||| | | Sbjct 525 ATCATCAATGCTATCTCCTGTCATGGCCAAAAGAAAACAGCTTGATAGTTGAGCTCTGTT 466 Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 || || |||||||| | || || || || || ||||||||| ||||||| | | ||| Sbjct 465 GGTACCAGCATTAAACAGTGTCGGTGATGCATGTGTAAACCATCTTTCAGACATCAAATT 406 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || ||||||| ||||| ||||| ||| || || | || |||||||| || Sbjct 405 ATAAGTACCAATAGCGGAGTCAATATCTTCACCATGTATACCAATTGATACACGCATCAA 346 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 ||| || |||||||||||| | || || || | ||| || | ||| ||| | ||||| Sbjct 345 CATATGTTGAGGTCTTTCAGCAATTTTTCCATTGAGTTTTAAAAGGTAAGATCTCTCCAA 286 Query 63791 AGT 63793 || Sbjct 285 TGT 283 >seq157723 Length=4480 Score = 114 bits (126), Expect = 2e-20 Identities = 197/284 (69%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 || |||||| | | ||||||||| || ||||| | |||||||| | || ||||| Sbjct 3007 ATTTATCCAATCTAAAGCCCAATCTGCTTTCTTCCTAACACAAGGGAGATGCTCAATGGC 3066 Query 33537 ATTAAAGAGATAGtttttttCATTACTATCT--TTAACATAAGTATCGATCAAAAGACTA 33594 ||| |||||| | | ||| ||| || || | || ||||| || | |||||| Sbjct 3067 ATTGAAGAGACGTTCTCGTTCC--ACTGGCTCCTTGATGTATGTATCTATGAGTAGACTA 3124 Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654 ||||| || ||||| |||||||| || || || || || || || || || | ||| || Sbjct 3125 TACATCTCTGAATGGATGTTTTCCATTGCTATTTGGAAACCATAAAAGCAACGAGCTTCT 3184 Query 33655 GTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTG 33714 | | ||||||||| | || | || |||| ||||||||||| || || |||||| Sbjct 3185 GGCACTTGTACTTCTTGTGAGAAACACTCAACCAAGTTTTCATTCACAATACCATCACTG 3244 Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 33758 || ||||| || || || | ||| || |||| | |||| || Sbjct 3245 GCAGCAAAGAAGGCTAAGATATGAGAGATGAAATGTCTTTCATC 3288 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/200 (70%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 |||||||| || || ||||| || || | |||||| ||||| ||||| || || || Sbjct 2499 AATCTATCAGCAACAAATTCAATGTAAACTCTCATCAAATCACAGTTCATGCCAATGAGC 2558 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 ||||||||||| | || | |||||||||||||| || ||||| || | Sbjct 2559 CGCACTGGAAGAGCGTCTGTTAAGAATTCTTGTTCAATCTTCACAGCATC----ATCAAT 2614 Query 33253 GATC----TAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGC 33308 |||| | || | |||||| ||| || | |||||||| ||||||| || || Sbjct 2615 GATCTTCTTTACTTTCTCTTCAGATGGTTTATTCTTCAAATGTTTGTACATCAAGCAAGC 2674 Query 33309 GAAATCGCAGTGCAGACCCT 33328 ||||| ||||| ||||||| Sbjct 2675 AAAATCACAGTGGAGACCCT 2694 >seq164270 Length=4554 Score = 82.4 bits (90), Expect = 9e-11 Identities = 124/173 (72%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| || ||||||||||||||||| | || |||| || || || || || | || Sbjct 631 TCCAACCATAAAAATGCATACTCGTCAACTTTCCATAATTCACGTCAGCCATGTGAACAT 572 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | || ||||| || || || ||||||| ||||| || ||||| | || | ||| Sbjct 571 TGAATGACTGACTCTGGTCAATATAGGCTCCTCTGTCAGCTGCCATGTCAATCAA--TCT 514 Query 62182 TTTGTG-GA-ATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 ||| || || |||||||| | ||||||||||| ||| | ||| || |||| Sbjct 513 TTTCTGAGATATTTCCCATACAGTTTTATAAAGCTTCTTCAAATCATCAGGAA 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621615237657480