Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq109567 111 1e-19 >seq109567 Length=8344 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | ||| || ||||| || || ||||| || | Sbjct 5562 CCACCACGTAGACGTAGAACCAAATGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGAC 5503 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || || ||||||||||| |||| | ||| || || || || ||| Sbjct 5502 AAGGTTCGACCATCTTCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGATCTGGTGGG 5443 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| | | || ||| | | ||| | || ||| | | ||| | Sbjct 5442 ATTCCTTCTTTGTCT-TGAATCTTTGTCTTCACATTCTCAATTGTGTCGCTTGCCTCAAC 5384 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| |||||||| || | ||||| || ||||||||||| Sbjct 5383 CTCAAGGGTAATAGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCAT 5336 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || || || | ||| || || || || |||||||| || ||| Sbjct 4878 CCACCGCGAAGACGAAGAACCAAGTGAAGGGTTGATTCTTTCTGTATGTTGTAGTCACTC 4819 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || || || ||||| ||| |||| | ||| || ||||| || ||| Sbjct 4818 AAAGTTCGGCCATCTTCGAGTTGTTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGCGGG 4759 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| || ||| ||| | | ||| | |||||| ||| || | Sbjct 4758 ATGCCTTCTTTGTCTTGAATCTTCGTCTTTACATTCTCGATAGTATCACTGGGTTCAACC 4699 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGAC 131237 || | ||| | || || || |||| ||||| || || || |||||||| Sbjct 4698 TCAAGGGTGATAGTCTTGCCAGTTAAGGTTTTCACAAAGATTTGCATGAC 4649 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || || || || |||||||||||||| | Sbjct 5790 CCACCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGAC 5731 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || || ||||||||||| |||| | ||| || ||||| || ||| Sbjct 5730 AGGGTTCGGCCATCTTCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGGTCTGGTGGG 5671 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||||| || | | ||| | || ||| | | || | Sbjct 5670 ATCCCTTCTTTGTCTTGAATTTTGGTTTTCACATTCTCAATGGTGTCGCTTGCTTCCACT 5611 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||||| || || || ||||| || ||||||||||| Sbjct 5610 TCTAGGGTTATTGTTTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 5564 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | |||||| || || || || ||||| || | Sbjct 5334 CCACCACGTAGACGTAGAACCAAATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGAC 5275 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || || || ||||| ||| | || | |||||| ||||| || ||| Sbjct 5274 AAGGTTCGACCATCTTCCAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGGTCTGGCGGG 5215 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || |||||| ||| | | || | || ||| | | ||| | Sbjct 5214 ATGCCTTCTTTATCTTGAATTTTCGTCTTCACGTTTTCAATCGTGTCGCTTGGCTCAACT 5155 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || | ||||| |||||||||||||| Sbjct 5154 TCTAGAGTGATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 5108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471003559931520