Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq157723 123 3e-23 seq63152 123 3e-23 seq164270 82.4 1e-10 >seq157723 Length=4480 Score = 123 bits (136), Expect = 3e-23 Identities = 199/284 (70%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 || |||||| | | ||||||||| || ||||| | |||||||| | ||| || || Sbjct 3007 ATTTATCCAATCTAAAGCCCAATCTGCTTTCTTCCTAACACAAGGGAGATGCTCAATGGC 3066 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCT--TTAACATATGTATCAATCAAAAGACTA 32951 ||| |||||| | | ||| ||| || || | |||||||| || | |||||| Sbjct 3067 ATTGAAGAGACGTTCTCGTTCC--ACTGGCTCCTTGATGTATGTATCTATGAGTAGACTA 3124 Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCG 33011 ||||| || ||||| |||||||| || || ||||| || || || ||||| | ||| || Sbjct 3125 TACATCTCTGAATGGATGTTTTCCATTGCTATTTGGAAACCATAAAAGCAACGAGCTTCT 3184 Query 33012 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 33071 | | ||||||||| | || | || | || ||||||||||| || || |||||| Sbjct 3185 GGCACTTGTACTTCTTGTGAGAAACACTCAACCAAGTTTTCATTCACAATACCATCACTG 3244 Query 33072 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 33115 || ||||| || || || | ||| || |||| | |||| || Sbjct 3245 GCAGCAAAGAAGGCTAAGATATGAGAGATGAAATGTCTTTCATC 3288 Score = 100 bits (110), Expect = 4e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | || ||||| || || | || ||||| |||||||| || || Sbjct 2782 TCATCTCTGCTTATGAGCTCATTGGAGAAAGTTAAACCAGGCATAAGGCCACGTTTCTTC 2841 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 32804 |||||||| || || ||||||||||| || ||||| || ||||| || || ||||| || Sbjct 2842 AGCCAAAAGATAGATGCAAATGATCCTGAGAAGAAGATGCCTTCAACAGCAGCAAAAGCT 2901 Query 32805 ATAAGTCTCTCTCCA 32819 | || |||||| ||| Sbjct 2902 ACAATTCTCTCACCA 2916 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/200 (71%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 |||||||| || |||||||| || || | |||||| ||||| ||||| || || || Sbjct 2499 AATCTATCAGCAACAAATTCAATGTAAACTCTCATCAAATCACAGTTCATGCCAATGAGC 2558 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609 ||||||||||| | || | |||||||||||||| || || || || | Sbjct 2559 CGCACTGGAAGAGCGTCTGTTAAGAATTCTTGTTCAATCTTCACAGCATC----ATCAAT 2614 Query 32610 GATC----TTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 32665 |||| ||||| | |||||| ||| || | |||||||| ||||||| || || Sbjct 2615 GATCTTCTTTACTTTCTCTTCAGATGGTTTATTCTTCAAATGTTTGTACATCAAGCAAGC 2674 Query 32666 GAAATCGCAGTGTAGACCCT 32685 ||||| ||||| ||||||| Sbjct 2675 AAAATCACAGTGGAGACCCT 2694 >seq63152 Length=2952 Score = 123 bits (136), Expect = 3e-23 Identities = 209/303 (69%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 ||| ||||| || || || |||| ||||||| || |||| | ||| || ||| | || Sbjct 585 TAGCCCTATACCACCAGCACTTTTTGAGATTAGAGCACATCTTGTTAGAGTCTCAAATAT 526 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63465 | || || ||||| | ||||| | ||||||||||| || | ||| | | Sbjct 525 ATCATCAATGCTATCTCCTGTCATGGCCAAAAGAAAACAGCTTGATAGTTGAGCTCTGTT 466 Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 || || |||||||| | || || || || || ||||||||| ||||||| | | ||| Sbjct 465 GGTACCAGCATTAAACAGTGTCGGTGATGCATGTGTAAACCATCTTTCAGACATCAAATT 406 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || ||||||| ||||| ||||| ||| || || | || |||||||| || Sbjct 405 ATAAGTACCAATAGCGGAGTCAATATCTTCACCATGTATACCAATTGATACACGCATCAA 346 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||| || |||||||||||| | || || || | ||| || | ||| ||| | ||||| Sbjct 345 CATATGTTGAGGTCTTTCAGCAATTTTTCCATTGAGTTTTAAAAGGTAAGATCTCTCCAA 286 Query 63646 AGT 63648 || Sbjct 285 TGT 283 >seq164270 Length=4554 Score = 82.4 bits (90), Expect = 1e-10 Identities = 123/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || ||||||||||||||||| | || |||| || || || || || | || Sbjct 631 TCCAACCATAAAAATGCATACTCGTCAACTTTCCATAATTCACGTCAGCCATGTGAACAT 572 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT-AATCGTC 62035 | | || ||||| || || || ||||||| ||||| || ||||| | || |||| | Sbjct 571 TGAATGACTGACTCTGGTCAATATAGGCTCCTCTGTCAGCTGCCATGTCAATCAATCTT- 513 Query 62036 TTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 || || | |||||||| | ||||||||||| ||| | ||| || |||| Sbjct 512 TTCTGAGATATTTCCCATACAGTTTTATAAAGCTTCTTCAAATCATCAGGAA 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632277191818800