Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq109567 118 9e-22 seq56214 98.7 9e-16 >seq109567 Length=8344 Score = 118 bits (130), Expect = 9e-22 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || |||| || ||| | || || | |||||||| | Sbjct 5564 ATGCAGATTTTTGTGAAAACCCTGACTGGCAAAACAATAACCCTAGAAGTGGAAGCAAGC 5623 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| |||| | |||| ||| |||||||||||||| ||||| ||||| Sbjct 5624 GACACCATTGAGAATGTGAAAACCAAAATTCAA-GACAAAGAAGGGATCCCACCAGACCA 5682 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||| ||| | ||||||| || || || |||||||| Sbjct 5683 ACAACGTCTCATCTTTGCAGGCAAGCAACTGGAAGATGGCCGAACCCTGTCTGATTACAA 5742 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 ||||| ||||||||||| || || || || || | || | || ||||| || Sbjct 5743 CATTCAGAAAGAATCCACTCTTCACTTGGTTCTCCGTCTTCGTGGTGGAAACTA 5796 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || ||||| || || | ||||| | ||||| ||| | Sbjct 5108 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATCACTCTAGAAGTTGAGCCAAGC 5167 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || ||||| | |||| ||| || |||||||| || || || ||||| Sbjct 5168 GACACGATTGAAAACGTGAAGACGAAAATTCAA-GATAAAGAAGGCATCCCGCCAGACCA 5226 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | ||||| || ||||||||| | ||||||| ||| || || || ||||| Sbjct 5227 ACAGCGTCTCATTTTCGCTGGCAAACAACTGGAAGATGGTCGAACCTTGTCTGACTACAA 5286 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || |||||||| || || ||||| || ||| | ||| | || || Sbjct 5287 TATCCAGAAAGAATCGACCCTTCATTTGGTTCTACGTCTACGTGGTGG 5334 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || ||||| |||||| | || || | || || ||| | Sbjct 5336 ATGCAGATTTTTGTGAAAACCTTGACTGGTAAAACTATTACCCTTGAGGTTGAGGCAAGC 5395 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| ||||| |||| | ||| ||||||||||| || ||||| || || Sbjct 5396 GACACAATTGAGAATGTGAAGACAAAGATTCAA-GACAAAGAAGGAATCCCACCAGATCA 5454 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||| ||| | ||||||| ||| || || || ||||| Sbjct 5455 ACAACGTCTCATCTTTGCAGGCAAGCAACTGGAAGATGGTCGAACCTTGTCTGACTACAA 5514 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || ||||| || || ||||| || ||| | ||| | || || Sbjct 5515 TATCCAGAAGGAATCAACCCTTCATTTGGTTCTACGTCTACGTGGTGG 5562 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || || || || || | ||||| | || || || | | Sbjct 4652 ATGCAAATCTTTGTGAAAACCTTAACTGGCAAGACTATCACCCTTGAGGTTGAACCCAGT 4711 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||||||| | ||| | || | ||| ||||||||||| || || || ||||| Sbjct 4712 GATACTATCGAGAATGTAAAGACGAAGATTCAA-GACAAAGAAGGCATCCCGCCAGACCA 4770 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || ||||||||| | ||||||| || ||| || | || ||||| Sbjct 4771 ACAACGTCTCATCTTCGCTGGCAAACAACTCGAAGATGGCCGAACTTTGAGTGACTACAA 4830 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || |||||||| || || || || || || Sbjct 4831 CATACAGAAAGAATCAACCCTTCACTTGGTTCT 4863 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || ||||| || || | ||||| | ||||| ||| | Sbjct 4880 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATCACTCTAGAAGTTGAGCCAAGC 4939 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | ||| | |||| ||| ||||||||||| || || || || || Sbjct 4940 GACACGATTGAAAATGTAAAGACGAAAATTCAA-GACAAAGAAGGCATCCCGCCAGATCA 4998 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | ||||| || ||||||||| | ||||||| || || || || ||||| Sbjct 4999 ACAACGTCTCATTTTCGCTGGCAAACAACTGGAAGATGGCCGAACCTTGTCTGACTACAA 5058 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || |||||||| || || ||||| || ||| | ||| | || || Sbjct 5059 TATCCAGAAAGAATCAACCCTTCATTTGGTTCTACGTCTACGTGGTGG 5106 >seq56214 Length=996 Score = 98.7 bits (108), Expect = 9e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| ||||| || ||||||||| || | ||||||||||||||||| || || |||| || Sbjct 664 AGGCATTCCTCCAGACCAACAGAGGTTAATTTTTGCCGGCAAACAGTTGGAGGATGGCCG 605 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 || || | ||||| ||||| || ||||||||||| || ||| | ||||| | || | Sbjct 604 AACCTTGAGTGATTATAATATCCAGAAAGAATCCACCCTTCATCTTGTGCTCCGATTACG 545 Query 25220 AGGAGGA 25226 ||| ||| Sbjct 544 AGGTGGA 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432424637462195