Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq109567 147 2e-30 >seq109567 Length=8344 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | | ||| || || | || |||||||| |||||||||||||| | Sbjct 5790 CCACCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGAC 5731 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || |||||| ||||| || || || |||||||||| |||||||| || || Sbjct 5730 AGGGTTCGGCCATCTTCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGGTCTGGTGGG 5671 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT-TCAACGGTGTCGGTGGATTCGAC 114334 || ||||||||||| ||| ||| ||||| | | |||| ||||||| | | ||| || Sbjct 5670 ATCCCTTCTTTGTCTTGAAT-TTTGGTTTTCACATTCTCAATGGTGTCGCTTGCTTCCAC 5612 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | |||||||| ||||| ||||| |||||||||||||| Sbjct 5611 TTCTAGGGTTATTGTTTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 5564 Score = 143 bits (158), Expect = 2e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| |||||||| | | ||| ||||| | || |||||||| || || ||||| || Sbjct 5337 ATACCACCACGTAGACGTAGAACCAAATGAAGGGTCGATTCTTTCTGGATATTGTAGTCA 5278 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| |||||| |||||||| |||||| | ||||||||||||||||| || Sbjct 5277 GACAAGGTTCGACCATCTTCCAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGGTCTGGC 5218 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 || ||||||||||| || ||| ||| || || | | ||||| |||||| | | || Sbjct 5217 GGGATGCCTTCTTTATCTTGAAT-TTTCGTCTTCACGTTTTCAATCGTGTCGCTTGGCTC 5159 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||| ||||| |||| ||||| || ||||||||||| Sbjct 5158 AACTTCTAGAGTGATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 5108 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| |||||||| | | ||| ||||| | || |||||||| || || ||||| || Sbjct 5109 ATACCACCACGTAGACGTAGAACCAAATGAAGGGTTGATTCTTTCTGGATATTGTAGTCA 5050 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| |||||||| |||||| | |||||||| ||||| || || Sbjct 5049 GACAAGGTTCGGCCATCTTCCAGTTGTTTGCCAGCGAAAATGAGACGTTGTTGATCTGGC 4990 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGT-TTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 || |||||||||||||| ||| ||| || |||| | ||||| |||||| | | || Sbjct 4989 GGGATGCCTTCTTTGTCTTGAAT-TTTCGTCTTTACATTTTCAATCGTGTCGCTTGGCTC 4931 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||| ||||| |||| ||||| || ||||||||||| Sbjct 4930 AACTTCTAGAGTGATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 4880 Score = 138 bits (152), Expect = 9e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | ||| || || | || |||||||| || |||||||| || Sbjct 4881 ATACCACCGCGAAGACGAAGAACCAAGTGAAGGGTTGATTCTTTCTGTATGTTGTAGTCA 4822 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| ||| || |||||| |||||||| |||||| |||||||||| |||||||| || Sbjct 4821 CTCAAAGTTCGGCCATCTTCGAGTTGTTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGC 4762 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||||||||| |||||| |||| | || | || || ||| ||| Sbjct 4761 GGGATGCCTTCTTTGTCTTGAATCTTCGTCTTTACATTCTCGATAGTATCACTGGGTTCA 4702 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || ||||| || | ||||| ||||| || |||||| Sbjct 4701 ACCTCAAGGGTGATAGTCTTGCCAGTTAAGGTTTTCACAAAGATTTGCATG 4651 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| |||||||| | | ||| ||||| | || ||||| || || || ||||| || Sbjct 5565 ATACCACCACGTAGACGTAGAACCAAATGAAGGGTTGATTCCTTCTGGATATTGTAGTCA 5506 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| |||||| ||||| || || || |||||||||| ||||| || || Sbjct 5505 GACAAGGTTCGACCATCTTCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGATCTGGT 5446 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| ||||||| || | | |||| |||||| | | || Sbjct 5445 GGGATTCCTTCTTTGTCTTGAATCTTTGTCTTCACATTCTCAATTGTGTCGCTTGCCTCA 5386 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| || |||| ||||| |||||||||||||| Sbjct 5385 ACCTCAAGGGTAATAGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCAT 5336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419258542271436