Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq109567 111 1e-19 >seq109567 Length=8344 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || ||||| || |||||||| || || | |||| | ||| |||| ||| Sbjct 5311 ATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGACAAGGTTCGACCATCTTCCAGTTG 5252 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| || ||| | || | || || ||||| ||||| ||||||||||||||||||||||| Sbjct 5251 TTTGCCAGCGAAAATGAGACGCTGTTGGTCTGGCGGGATGCCTTCTTTATCTTGAATTTT 5192 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | ||| | |||||| | ||| ||||| ||||| | ||| ||||| || Sbjct 5191 CGTCTTCACGTTTTCAATCGTGTCGCTTGGCTCAACTTCTAGAGTGATCGTCTTGCCAGT 5132 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || ||||| ||||| Sbjct 5131 CAAGGTTTTCACGAAAATCTGCAT 5108 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || |||||||| || |||||||| || || | |||| ||| |||| ||| Sbjct 5083 ATGAAGGGTTGATTCTTTCTGGATATTGTAGTCAGACAAGGTTCGGCCATCTTCCAGTTG 5024 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| || ||| | || | ||||| || || ||||| ||||||||||| ||||||||||| Sbjct 5023 TTTGCCAGCGAAAATGAGACGTTGTTGATCTGGCGGGATGCCTTCTTTGTCTTGAATTTT 4964 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | ||| | |||||| | ||| ||||| ||||| | ||| ||||| || Sbjct 4963 CGTCTTTACATTTTCAATCGTGTCGCTTGGCTCAACTTCTAGAGTGATCGTCTTGCCAGT 4904 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || ||||| ||||| Sbjct 4903 CAAGGTTTTCACGAAAATCTGCAT 4880 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || ||||||||||| |||||||| || || | |||| | ||| |||| ||| Sbjct 5539 ATGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACAAGGTTCGACCATCTTCCAGTTG 5480 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 || ||||| | || | ||||| || || || || || |||||||| ||||||| | | Sbjct 5479 CTTGCCTGCAAAGATGAGACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAA-TCT 5421 Query 45257 TTGTTTGATCGC-TTCT--ACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 |||| | || | |||| | |||||| | ||| || || || |||| ||||| || Sbjct 5420 TTGTCT--TCACATTCTCAATTGTGTCGCTTGCCTCAACCTCAAGGGTAATAGTTTTACC 5363 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | ||||| |||||||| ||||| Sbjct 5362 AGTCAAGGTTTTCACAAAAATCTGCAT 5336 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| || || || || ||||| | |||| ||| |||| ||| Sbjct 5766 TGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGACAGGGTTCGGCCATCTTCCAGTTGC 5707 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | || | ||||| ||||| || || || |||||||| ||||||| |||| Sbjct 5706 TTGCCTGCAAAGATGAGACGTTGTTGGTCTGGTGGGATCCCTTCTTTGTCTTGAA-TTTT 5648 Query 45258 TGTTTGATCGC-TTCT--ACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 |||| || | |||| | ||||||| | || ||||| || || | |||||||| Sbjct 5647 GGTTT--TCACATTCTCAATGGTGTCGCTTGCTTCCACTTCTAGGGTTATTGTTTTGCCA 5590 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| |||||||| ||||| Sbjct 5589 GTCAGGGTTTTCACAAAAATCTGCAT 5564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451036743707880