Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq109567 122 2e-22 >seq109567 Length=8344 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || ||||| || || |||| |||||||||| ||| || | ||||||||||| || Sbjct 5310 TGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGACAAGGTTCGACCATCTTCCAGTTGT 5251 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || ||||| ||||||||||| ||||| || || |||||| || ||||| || Sbjct 5250 TTGCCAGCGAAAATGAGACGCTGTTGGTCTGGCGGGATGCCTTCTTTATCTTGAATTTTC 5191 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||||||| ||| | ||||| ||| || || || | ||||||||||| || || Sbjct 5190 GTCTTCACGTTTTCAATCGTGTCGCTTGGCTCAACTTCTAGAGTGATCGTCTTGCCAGTC 5131 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | |||||||| ||||| || Sbjct 5130 AAGGTTTTCACGAAAATCTG 5111 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || ||||| |||| |||||||||| ||| || | ||||||||||| ||| Sbjct 5538 TGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACAAGGTTCGACCATCTTCCAGTTGC 5479 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || ||||||||||| || || || || ||||||||| || ||||||||| Sbjct 5478 TTGCCTGCAAAGATGAGACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATCTTT 5419 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 |||||| || | ||||| ||| || || || | || || || ||||| || Sbjct 5418 GTCTTCACATTCTCAATTGTGTCGCTTGCCTCAACCTCAAGGGTAATAGTTTTACCAGTC 5359 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | |||||||||||||| || Sbjct 5358 AAGGTTTTCACAAAAATCTG 5339 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || || || || || || | |||||||||| |||||| Sbjct 4872 CGAAGACGAAGAACCAAGTGAAGGGTTGATTCTTTCTGTATGTTGTAGTCACTCAAAGTT 4813 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || || || || |||||||||||||| || ||||| || || ||| Sbjct 4812 CGGCCATCTTCGAGTTGTTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGCGGGATGCCT 4753 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || |||||||| ||| || |||| || || | | ||| || || | Sbjct 4752 TCTTTGTCTTGAATCTTCGTCTTTACATTCTCGATAGTATCACTGGGTTCAACCTCAAGG 4693 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||||||||||| ||||| Sbjct 4692 GTGATAGTCTTGCCAGTTAAGGTTTTCACAAAGATTTG 4655 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| ||||| || || || || | |||||| |||| || || Sbjct 5784 CGAAGACGGAGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGACAGGGTT 5725 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||| ||||| || || ||||||||||| || ||||| || || ||| Sbjct 5724 CGGCCATCTTCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGGTCTGGTGGGATCCCT 5665 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || ||||| || ||||| || | |||||| ||| ||| || || | Sbjct 5664 TCTTTGTCTTGAATTTTGGTTTTCACATTCTCAATGGTGTCGCTTGCTTCCACTTCTAGG 5605 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || |||||||||||||| || Sbjct 5604 GTTATTGTTTTGCCAGTCAGGGTTTTCACAAAAATCTG 5567 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || || || |||| |||||||||| ||| || | ||||||||||| || Sbjct 5082 TGAAGGGTTGATTCTTTCTGGATATTGTAGTCAGACAAGGTTCGGCCATCTTCCAGTTGT 5023 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || ||||| |||||||| || || || || || |||||| || ||||| || Sbjct 5022 TTGCCAGCGAAAATGAGACGTTGTTGATCTGGCGGGATGCCTTCTTTGTCTTGAATTTTC 4963 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || ||| | ||||| ||| || || || | ||||||||||| || || Sbjct 4962 GTCTTTACATTTTCAATCGTGTCGCTTGGCTCAACTTCTAGAGTGATCGTCTTGCCAGTC 4903 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | |||||||| ||||| || Sbjct 4902 AAGGTTTTCACGAAAATCTG 4883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176337855895551