Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq63152 170 2e-37 seq157723 109 6e-19 seq164270 89.7 6e-13 >seq63152 Length=2952 Score = 170 bits (188), Expect = 2e-37 Identities = 220/303 (73%), Gaps = 8/303 (3%) Strand=Plus/Minus Query 48483 CCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCT 48542 ||||||||||| || |||| || ||||||||||| | | | || || ||| | || | Sbjct 581 CCTATACCACCAGCACTTTTTGAGATTAGAGCACATCTTGTTAGAGTCTCAAATATATCA 522 Query 48543 TCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCG----GATGACA 48598 || || ||||| || |||| || |||||||| || || | ||| | | || Sbjct 521 TCAATGCTATCTCCTGTCATGGCCAAAAGAAAACAGCTTGATAGTTGAGCTCTGTTG--- 465 Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 || || | |||||| | ||| || |||||||| |||||||| | || || | ||| || Sbjct 464 -GTACCAGCATTAAACAGTGTCGGTGATGCATGTGTAAACCATCTTTCAGACATCAAATT 406 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 ||| || ||||| | || || ||||| ||||||||| || ||||||||||| || Sbjct 405 ATAAGTACCAATAGCGGAGTCAATATCTTCACCATGTATACCAATTGATACACGCATCAA 346 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||||| ||||||||||||| ||||||| ||| | ||| ||||| || ||| | ||||| Sbjct 345 CATATGTTGAGGTCTTTCAGCAATTTTTCCATTGAGTTTTAAAAGGTAAGATCTCTCCAA 286 Query 48779 TGT 48781 ||| Sbjct 285 TGT 283 Score = 104 bits (114), Expect = 3e-17 Identities = 128/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 48262 GTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATG 48321 ||||||| || || | || || | | |||||||| || ||||||||||||||| | Sbjct 1181 GTTCTTCCTTTCCTGTGTTTTTTCTTAAATCAAGAAACTCGTATATATCAGCATGCCAAG 1122 Query 48322 GTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGG 48381 |||| | || || || | | ||||| ||||| || || |||||||| | |||||| | Sbjct 1121 GTTCAAGGTAAATAGCAAAGGCTCCTGGACGTTTGTTGCCACCTTGATCAACATATCTCG 1062 Query 48382 CAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGT 48436 |||| |||||||| | |||||||| ||||| ||||| || |||||| || Sbjct 1061 CAGTTGCATTATAAACACGCAACATTGGTACAATGCCATTGGAATAACCATTAGT 1007 >seq157723 Length=4480 Score = 109 bits (120), Expect = 6e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| ||||| | ||||| || || |||||||||||||| || || | ||| || Sbjct 2782 TCATCTCTGCTTATGAGCTCATTGGAGAAAGTTAAACCAGGCATAAGGCCACGTTTCTTC 2841 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||| || ||||| ||||||||||| || ||||| || ||||| || || |||||||| Sbjct 2842 AGCCAAAAGATAGATGCAAATGATCCTGAGAAGAAGATGCCTTCAACAGCAGCAAAAGCT 2901 Query 19105 ACTAGTCTTTCTCCA 19119 || | ||| || ||| Sbjct 2902 ACAATTCTCTCACCA 2916 >seq164270 Length=4554 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/152 (74%), Gaps = 4/152 (3%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| ||||| ||||||||||| || || || |||| | || | || |||| || Sbjct 631 TCCAACCATAAAAATGCATACTCGTCAACTTTCCATAATTCACGTCAGCCATGTGAACAT 572 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | || |||||||| |||||| | || ||||| ||||||||||| || || || | Sbjct 571 TGAATGACTGACTCTGGTCAATATAGGCTCCTCTGTCAGCTGCCATGTC--AATCAATCT 514 Query 47170 TT--TGTGGTATCTCCCATACTGTTTTATAAA 47199 || || | ||| |||||||| |||||||||| Sbjct 513 TTTCTGAGATATTTCCCATACAGTTTTATAAA 482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560906920042920