Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_016562.1 Length=132662 Score E Sequences producing significant alignments: (Bits) Value seq14454 150 2e-31 seq14455 143 2e-29 >seq14454 Length=5724 Score = 150 bits (166), Expect = 2e-31 Identities = 149/193 (77%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 39879 CAAAATCTCCACCACCTTGCCATTGTACTTCTTTACTAATACCACCTTGCTCACCTTCTA 39938 |||| || || |||||||||||||| |||| |||||| || || ||||| || || || | Sbjct 4729 CAAAGTCGCCTCCACCTTGCCATTGAACTTTTTTACTTATGCCCCCTTGTTCGCCATCAA 4788 Query 39939 TAACTTTTTTAAGTCTTTCTTTTGTGATAGTTTCTATATAATCCATTTGTTCTATACCTA 39998 |||||||||| |||| |||| | | |||| ||| || |||||||||||||| |||| Sbjct 4789 TAACTTTTTTTAGTCGTTCTACGGCTACGGTTTTTATGTAGTCCATTTGTTCTATGCCTA 4848 Query 39999 TCCATTTGCGTTTCATTTTATGTGCTACTGCTAAAGTAGTGCCACTTCCTGCAAAAAAGT 40058 | ||| | | |||||| ||||| ||||| ||||||||||||| || |||||| | Sbjct 4849 TGTATTGTCTTCCCATTTTGTGTGCAACTGCACAAGTAGTGCCACTGCCAAGAAAAAAAT 4908 Query 40059 CCATTACAAGATC 40071 | | ||||| ||| Sbjct 4909 CTAGTACAATATC 4921 Score = 120 bits (132), Expect = 3e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 40633 AACAAAATTCTCTCTACCAAATATCTCATCCATAAGTACTTTTAAATACGCTTGCTCGTT 40692 ||||||||||||||| ||||| | |||||||| ||||| |||| || ||||| ||||| Sbjct 5447 AACAAAATTCTCTCTCCCAAACACTTCATCCATGAGTACCTTTAGGTAGGCTTGTTCGTT 5506 Query 40693 ATCATCACATTGAACGAATATAACACCATCATCTTTTAAAAATTCTCTAGCTACTTCTAA 40752 ||||| ||||| ||||| ||||| |||||||| | ||| | | ||||||||||| Sbjct 5507 GTCATCGCATTGCACGAAAATAACGCCATCATCCCGCAGTAATGTTTTTGCTACTTCTAA 5566 Query 40753 TCTTTCTTTCATAAATTTTAACCA 40776 || | ||||||||| |||||| Sbjct 5567 TCGGTTTTTCATAAACACTAACCA 5590 >seq14455 Length=1418 Score = 143 bits (158), Expect = 2e-29 Identities = 145/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 39879 CAAAATCTCCACCACCTTGCCATTGTACTTCTTTACTAATACCACCTTGCTCACCTTCTA 39938 |||| || || |||||||||||||| ||| |||||| || || ||||| || || || | Sbjct 396 CAAAGTCGCCTCCACCTTGCCATTGCACTGTTTTACTTATGCCTCCTTGTTCGCCATCAA 455 Query 39939 TAACTTTTTTAAGTCTTTCTTTTGTGATAGTTTCTATATAATCCATTTGTTCTATACCTA 39998 |||||||||| |||| |||| | | |||| ||| || |||||||||||||| |||| Sbjct 456 TAACTTTTTTTAGTCGTTCTACGGCTACGGTTTTTATGTAGTCCATTTGTTCTATGCCTA 515 Query 39999 TCCATTTGCGTTTCATTTTATGTGCTACTGCTAAAGTAGTGCCACTTCCTGCAAAAAAGT 40058 | ||| | | |||||| ||||| ||||| ||||||||||||| || |||||| | Sbjct 516 TGTATTGTCTTCCCATTTTGTGTGCAACTGCACAAGTAGTGCCACTGCCAAGAAAAAAAT 575 Query 40059 CCATTACAA 40067 | | ||||| Sbjct 576 CTAGTACAA 584 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 40630 ATTAACAAAATTCTCTCTACCAAATATCTCATCCATAAGTACTTTTAAATACGCTTGCTC 40689 ||| |||||||||||||| ||||| | |||||||| || || || | || ||||| || Sbjct 1138 ATTCACAAAATTCTCTCTCCCAAACACTTCATCCATGAGCACCTTCAGGTAGGCTTGTTC 1197 Query 40690 GTTATCATCACATTGAACGAATATAACACCATCATCTTTTAAAAATTCTCTAGCTACTTC 40749 ||| ||||| ||||| || || ||||| |||||||| | ||| | | |||||||| Sbjct 1198 GTTGTCATCGCATTGCACAAAAATAACGCCATCATCACGCAGCAATGTTTTTGCTACTTC 1257 Query 40750 TAATCTTTCTTTCATAAATTTTAACCA 40776 ||||| | ||||||||| |||||| Sbjct 1258 TAATCGGTTTTTCATAAACACTAACCA 1284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423508863081259