Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_019507.1 Length=182833 Score E Sequences producing significant alignments: (Bits) Value seq14455 136 5e-27 seq14454 136 5e-27 >seq14455 Length=1418 Score = 136 bits (150), Expect = 5e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 100533 AAAGTTAAACTTATCTATATTGATCCACCTTATAATACAGGCAATACTAGTTTTAATTAT 100592 ||| | ||||| ||||| || || ||||| || || || ||||||| || |||| ||| Sbjct 1368 AAAATAAAACTCATCTACATAGACCCACCGTACAACACTGGCAATAATAATTTTGTTTAC 1309 Query 100593 AACGACAAATTTAAACACACTACTTGGCTTACT-TTTATGAAAAATCGCCTTGAAATTGC 100651 ||||| || ||||| |||| || ||| ||| | ||||||||||| || | ||| | || Sbjct 1308 AACGATAATTTTAATCACAGCACATGG-TTAGTGTTTATGAAAAACCGATTAGAAGTAGC 1250 Query 100652 TAGGGAATTTTTAAGAGATGATGGTGTAATATTCGTTCAATGTGACGATAACGAGCAAGC 100711 | ||| | | |||||||| || || || || ||||| || || ||||| ||||| Sbjct 1249 AAAAACATTGCTGCGTGATGATGGCGTTATTTTTGTGCAATGCGATGACAACGAACAAGC 1190 Query 100712 GTATTTAAAAGTACTTATGGATGATATATTTGGTAGAGAGAATTTTGTTAAT 100763 || | || || || |||||||| | ||||| |||||||||||||| ||| Sbjct 1189 CTACCTGAAGGTGCTCATGGATGAAGTGTTTGGGAGAGAGAATTTTGTGAAT 1138 Score = 122 bits (134), Expect = 1e-22 Identities = 153/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 101323 GACATAGTAATGGACtttttttGCAGGAAGTGGCACTACCCTAGCTGTTGCCCATAAAAT 101382 ||||| ||| | || ||||||| || ||||||||||| || ||||| || ||||| Sbjct 588 GACATTGTACTAGA-TTTTTTTCTTGGCAGTGGCACTACTTGTGCAGTTGCACACAAAAT 530 Query 101383 GAAACGCAAATGGATAGGCATAGAACAAATGGATTATATAGAAACTATCACAAAAGAAAG 101442 | | | ||| |||||||||||||||||||| || ||| |||| | | |||| | Sbjct 529 GGGAAGACAATACATAGGCATAGAACAAATGGACTACATAAAAACCGTAGCCGTAGAACG 470 Query 101443 ACTCAAAAAAGTCATAGAAGGTGAGCAAGGTGGTATCAGCAAAGCAGTAAATTGGCAAGG 101502 ||| |||||||| || || || || ||||| || || || ||| |||| | |||||||| Sbjct 469 ACTAAAAAAAGTTATTGATGGCGAACAAGGAGGCATAAGTAAAACAGTGCAATGGCAAGG 410 Query 101503 TGGTGGAAGTTTTGTTTATGCTGAACTTA 101531 ||| || ||||| || |||||||| Sbjct 409 TGGAGGCGACTTTGTCTACTGTGAACTTA 381 >seq14454 Length=5724 Score = 136 bits (150), Expect = 5e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 100533 AAAGTTAAACTTATCTATATTGATCCACCTTATAATACAGGCAATACTAGTTTTAATTAT 100592 ||| | ||||| || || || || || || || || || ||||||| || |||| ||| Sbjct 5674 AAAATAAAACTCATTTACATAGACCCCCCGTACAACACTGGCAATAATAATTTTGTTTAC 5615 Query 100593 AACGACAAATTTAAACACACTACTTGGCTTACT-TTTATGAAAAATCGCCTTGAAATTGC 100651 || || || ||||| |||| || ||| ||| | ||||||||||| || | ||| | || Sbjct 5614 AATGATAATTTTAATCACAGCACATGG-TTAGTGTTTATGAAAAACCGATTAGAAGTAGC 5556 Query 100652 TAGGGAATTTTTAAGAGATGATGGTGTAATATTCGTTCAATGTGACGATAACGAGCAAGC 100711 | ||| | | |||||||| || || ||||| ||||| || || ||||| ||||| Sbjct 5555 AAAAACATTACTGCGGGATGATGGCGTTATTTTCGTGCAATGCGATGACAACGAACAAGC 5496 Query 100712 GTATTTAAAAGTACTTATGGATGATATATTTGGTAGAGAGAATTTTGTT 100760 || |||| ||||| |||||||| | ||||| ||||||||||||||| Sbjct 5495 CTACCTAAAGGTACTCATGGATGAAGTGTTTGGGAGAGAGAATTTTGTT 5447 Score = 116 bits (128), Expect = 4e-21 Identities = 152/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 101323 GACATAGTAATGGACtttttttGCAGGAAGTGGCACTACCCTAGCTGTTGCCCATAAAAT 101382 || || ||| | || ||||||| || ||||||||||| || ||||| || ||||| Sbjct 4921 GATATTGTACTAGA-TTTTTTTCTTGGCAGTGGCACTACTTGTGCAGTTGCACACAAAAT 4863 Query 101383 GAAACGCAAATGGATAGGCATAGAACAAATGGATTATATAGAAACTATCACAAAAGAAAG 101442 | | | ||| |||||||||||||||||||| || ||| |||| | | |||| | Sbjct 4862 GGGAAGACAATACATAGGCATAGAACAAATGGACTACATAAAAACCGTAGCCGTAGAACG 4803 Query 101443 ACTCAAAAAAGTCATAGAAGGTGAGCAAGGTGGTATCAGCAAAGCAGTAAATTGGCAAGG 101502 ||| |||||||| || || || || ||||| || || || ||| ||| | |||||||| Sbjct 4802 ACTAAAAAAAGTTATTGATGGCGAACAAGGGGGCATAAGTAAAAAAGTTCAATGGCAAGG 4743 Query 101503 TGGTGGAAGTTTTGTTTATGCTGAACTTA 101531 ||| || ||||| ||| |||||||| Sbjct 4742 TGGAGGCGACTTTGTCTATTGTGAACTTA 4714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583686908358840