Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq109567 118 2e-21 >seq109567 Length=8344 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || || |||| ||| | || | ||||| ||||| ||||| Sbjct 5109 ATACCACCACGTAGACGTAGAACCAAATGAAGGGTTGATTCTTTCTGGATATTGTAGTCA 5050 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || |||| ||| || | |||||| || || ||||| | | |||||||| || Sbjct 5049 GACAAGGTTCGGCCATCTTCCAGTTGTTTGCCAGCGAAAATGAGACGTTGTTGATCTGGC 4990 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| ||||| || |||| |||| ||| || ||| | |||| Sbjct 4989 GGGATGCCTTCTTTGTCTTGAATTTTCGTCTTTACATTTTCAATCGTGTCGCTTGGCTCA 4930 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||||| || || || || || | ||||| || || || ||||| Sbjct 4929 ACTTCTAGAGTGATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 4880 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || || |||| ||| | || | ||||| ||||| ||||| Sbjct 5337 ATACCACCACGTAGACGTAGAACCAAATGAAGGGTCGATTCTTTCTGGATATTGTAGTCA 5278 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || |||| | ||| || | |||||| || || ||||| | | |||||| || || Sbjct 5277 GACAAGGTTCGACCATCTTCCAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGGTCTGGC 5218 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||||||||| ||||| || || | ||| ||| || ||| | |||| Sbjct 5217 GGGATGCCTTCTTTATCTTGAATTTTCGTCTTCACGTTTTCAATCGTGTCGCTTGGCTCA 5158 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||||| || || || || || | ||||| || || || ||||| Sbjct 5157 ACTTCTAGAGTGATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 5108 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || || |||| ||| | || | || || ||||| ||||| Sbjct 5565 ATACCACCACGTAGACGTAGAACCAAATGAAGGGTTGATTCCTTCTGGATATTGTAGTCA 5506 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || |||| | ||| || | ||| || || ||||| || | | |||||||| || Sbjct 5505 GACAAGGTTCGACCATCTTCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGATCTGGT 5446 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| ||||| || || || || | ||| ||| || ||| | |||| Sbjct 5445 GGGATTCCTTCTTTGTCTTGAATCTTTGTCTTCACATTCTCAATTGTGTCGCTTGCCTCA 5386 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||||||||| || | ||||| ||||| || ||||| Sbjct 5385 ACCTCAAGGGTAATAGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCAT 5336 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || || ||||| || | | ||||| || || || || |||||||| Sbjct 5719 ATCTTCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGGTCTGGTGGGATCCCTTCTTT 5660 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| ||||||||||| | ||| ||| || ||| | || |||||||| ||||| Sbjct 5659 GTCTTGAATTTTGGTTTTCACATTCTCAATGGTGTCGCTTGCTTCCACTTCTAGGGTTAT 5600 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || ||||| ||||| || ||||| Sbjct 5599 TGTTTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 5564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897730792698960