Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq109567 152 5e-32 seq18521 84.2 2e-11 >seq109567 Length=8344 Score = 152 bits (168), Expect = 5e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| | || |||||||||||||| || || || || || | | Sbjct 5336 ATGCAGATTTTTGTGAAAACCTTGACTGGTAAAACTATTACCCTTGAGGTTGAGGCAAGC 5395 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || |||||| ||||||||||||||||| || || |||||| Sbjct 5396 GACACAATTGAGAATGTGAAGACAAAGATTCAAGACAAAGAAGGAATCCCACCAGATCAA 5455 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | |||||||| || || || ||||| ||| ||| | |||| || || || Sbjct 5456 CAACGTCTCATCTTTGCAGGCAAGCAACTGGAAGATGGTCGAACCTTGTCTGACTACAAT 5515 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || |||||||| || || || ||||| Sbjct 5516 ATCCAGAAGGAATCAACCCTTCATTTGGT 5544 Score = 150 bits (166), Expect = 2e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || ||||| || || || ||||| ||||| | | Sbjct 5564 ATGCAGATTTTTGTGAAAACCCTGACTGGCAAAACAATAACCCTAGAAGTGGAAGCAAGC 5623 Query 24764 GACACAGTAGAAACGGT-AAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||||| ||| || |||||||||||||| || || || || || Sbjct 5624 GACACCATTGAGAATGTGAAAACCAAA-ATTCAAGACAAAGAAGGGATCCCACCAGACCA 5682 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||| | |||||||| || || || ||||| ||| ||| | |||| ||||| || Sbjct 5683 ACAACGTCTCATCTTTGCAGGCAAGCAACTGGAAGATGGCCGAACCCTGTCTGATTACAA 5742 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||| || ||||| || || |||||||| Sbjct 5743 CATTCAGAAAGAATCCACTCTTCACTTGGT 5772 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| | || || || || || || || ||||| || | | | Sbjct 4880 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATCACTCTAGAAGTTGAGCCAAGC 4939 Query 24764 GACACAGTAGAAACGGTAAA-ACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| ||||| || ||| || |||||||||||||| || || || ||||| Sbjct 4940 GACACGATTGAAAATGTAAAGACGAAA-ATTCAAGACAAAGAAGGCATCCCGCCAGATCA 4998 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||| | || || || || ||||| ||||| ||| ||| | |||| || || || Sbjct 4999 ACAACGTCTCATTTTCGCTGGCAAACAACTGGAAGATGGCCGAACCTTGTCTGACTACAA 5058 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || ||||| || || || ||||| Sbjct 5059 TATCCAGAAAGAATCAACCCTTCATTTGGT 5088 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| |||| || || ||||| || || || || ||| ||| Sbjct 4652 ATGCAAATCTTTGTGAAAACCTTAACTGGCAAGACTATCACCCTTGAGGTTGAACCCAGT 4711 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| ||||| |||||||||||||| || || || || ||| Sbjct 4712 GATACTATCGAGAATGTAAAGACGAAGATTCAAGACAAAGAAGGCATCCCGCCAGACCAA 4771 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||| || || ||||| || || ||| ||| || || || ||| Sbjct 4772 CAACGTCTCATCTTCGCTGGCAAACAACTCGAAGATGGCCGAACTTTGAGTGACTACAAC 4831 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || ||||| || || |||||||| | || | ||||| || Sbjct 4832 ATACAGAAAGAATCAACCCTTCACTTGGTTCTTCGTCTTCGCGGTGG 4878 >seq18521 Length=2728 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 138541 TAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTC 138600 ||||| ||| | ||| | || ||||| |||||||||||||| | ||||||||||| | | Sbjct 182 TAAATATTGCTAGTGTATGGTTCAAAAGATTCGTTGTTTCCTAATATCTGAGCCGTTGAC 241 Query 138601 GCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTG 138644 ||||| |||||| ||||| | |||| ||| || | |||||| Sbjct 242 GCGGTAGGCATGGGCGCCAGGAGAAGACTATTTCGGACACCGTG 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448935645822840