Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq109567 111 1e-19 >seq109567 Length=8344 Score = 111 bits (122), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| || ||||||||||| || || || ||| | || |||| Sbjct 5775 AGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGACAGGGTTCGGCCATCT 5716 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||||||||| || || ||||| || ||||| |||||| | || | ||| || ||||| Sbjct 5715 TCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGGTCTGGTGGGATCCCTTCTTTGTC- 5657 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 || | |||| |||| | || || || | || | || || || || | |||||| | Sbjct 5656 TTGAATTTTGGTTT-TCACATTCTCAATGGTGTCGCTTGCTTCCACTTCTAGGGTTATTG 5598 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || || || ||||| || ||||| |||||||| Sbjct 5597 TTTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 5564 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| |||| ||| |||||||| || || ||||| || | | | || |||| Sbjct 5547 AGAACCAAATGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACAAGGTTCGACCATCT 5488 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||||||||| || || ||||| || ||||| || ||| | || | || || ||||| Sbjct 5487 TCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGATCTGGTGGGATTCCTTCTTTGTC- 5429 Query 34886 TTTATTTTTTGT-TTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | | ||||| || || || || || | || | ||||| || |||| ||| || Sbjct 5428 TTGAATCTTTGTCTTCAC--ATTCTCAATTGTGTCGCTTGCCTCAACCTCAAGGGTAATA 5371 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || | ||| || ||||| |||||||| Sbjct 5370 GTTTTACCAGTCAAGGTTTTCACAAAAATCTGCAT 5336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325013825471807