Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq109567 122 8e-23 >seq109567 Length=8344 Score = 122 bits (134), Expect = 8e-23 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| || |||||||| |||||||| || || || ||| | || || || Sbjct 5313 AAATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGACAAGGTTCGACCA-TCTTCCAG 5255 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || ||||| ||| ||||||| ||||| ||||| || ||||||||||| || || ||| Sbjct 5254 TTGTTTGCCAGCGAAAATGAGACGCTGTTGGTCTGGCGGGATGCCTTCTTTATCT-TGAA 5196 Query 133574 CTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| | ||| | | |||| ||||||| | ||||| || || | |||| || |||| Sbjct 5195 TTTTCGTCTTCACGTTTTCAATCGTGTCGCTTGGCTCAACTTCTAGAGTGATCGTCTTGC 5136 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| ||||| |||||||||||||| Sbjct 5135 CAGTCAAGGTTTTCACGAAAATCTGCAT 5108 Score = 113 bits (124), Expect = 4e-20 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| || |||||||| |||||||| || || || | | | || || || Sbjct 5085 AAATGAAGGGTTGATTCTTTCTGGATATTGTAGTCAGACAAGGTTCGGCCA-TCTTCCAG 5027 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || ||||| ||| ||||||| || || || || || ||||||||||| ||||| ||| Sbjct 5026 TTGTTTGCCAGCGAAAATGAGACGTTGTTGATCTGGCGGGATGCCTTCTTTGTCT-TGAA 4968 Query 133574 CTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| | ||| | | |||| ||||||| | ||||| || || | |||| || |||| Sbjct 4967 TTTTCGTCTTTACATTTTCAATCGTGTCGCTTGGCTCAACTTCTAGAGTGATCGTCTTGC 4908 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| ||||| |||||||||||||| Sbjct 4907 CAGTCAAGGTTTTCACGAAAATCTGCAT 4880 Score = 102 bits (112), Expect = 8e-17 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| || |||||||| || || | | | || || || |||||||| Sbjct 5760 GTGGATTCTTTCTGAATGTTGTAATCAGACAGGGTTCGGCCA-TCTTCCAGTTGCTTGCC 5702 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| || || ||||| || ||||| ||||| ||||| ||| ||| | || Sbjct 5701 TGCAAAGATGAGACGTTGTTGGTCTGGTGGGATCCCTTCTTTGTCT-TGAATTTTGGTTT 5643 Query 133583 GAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | ||||| |||||| | | ||||| || | ||| | |||||||| ||||| | Sbjct 5642 TCACATTCTCAATGGTGTCGCTTGCTTCCACTTCTAGGGTTATTGTTTTGCCAGTCAGGG 5583 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || ||||||||||| Sbjct 5582 TTTTCACAAAAATCTGCAT 5564 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||| || || ||||| |||||||| || || || ||| | || || || Sbjct 5541 AAATGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACAAGGTTCGACCA-TCTTCCAG 5483 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| || | ||||| || || || || || ||||| ||||| ||||| || Sbjct 5482 TTGCTTGCCTGCAAAGATGAGACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAAT 5423 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| ||| | | ||||| |||||| | | ||| || || | ||| | ||||| || Sbjct 5422 CTTTGTCTTCACATTCTCAATTGTGTCGCTTGCCTCAACCTCAAGGGTAATAGTTTTACC 5363 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||||| || ||||||||||| Sbjct 5362 AGTCAAGGTTTTCACAAAAATCTGCAT 5336 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| || ||||||||||| ||||| || | || || | | | || ||||| Sbjct 4857 AAGTGAAGGGTTGATTCTTTCTGTATGTTGTAGTCACTCAAAGTTCGGCCA-TCTTCGAG 4799 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || ||||| ||| | ||||| || || ||||| || ||||||||||| ||||| || Sbjct 4798 TTGTTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGCGGGATGCCTTCTTTGTCTTGAAT 4739 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||| | || || |||| || || || | ||||| || ||||| Sbjct 4738 CTTCGTCTTTACATTCTCGATAGTATCACTGGGTTCAACCTCAAGGGTGATAGTCTTGCC 4679 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 || | ||||| || || || |||||| Sbjct 4678 AGTTAAGGTTTTCACAAAGATTTGCATG 4651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482387167773720