Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq109567 127 1e-24 >seq109567 Length=8344 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || |||||| ||||| || ||||||||||| || Sbjct 5790 CCACCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGAC 5731 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| ||| || || ||||| || | ||| || || ||| | || Sbjct 5730 AGGGTTCGGCCATCTTCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGGTCTGGTGGG 5671 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| ||||| ||| ||| ||||||||||| |||||| Sbjct 5670 ATCCCTTCTTTGTCTTGAATTTTGGTTTTCA-CATTCTCAATGGTGTCGCTTGCTTCCAC 5612 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || || ||||| || || | ||||| ||||| ||||||||| Sbjct 5611 TTCTAGGGTTATTGTTTTGCCAGTCAGGGTTTTCACAAAAATCTGCATA 5563 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||||| |||||||| || || ||||| || || ||||| || || Sbjct 5107 ACCACCACGTAGACGTAGAACCAAATGAAGGGTTGATTCTTTCTGGATATTGTAGTCAGA 5048 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || |||| |||||| || || ||||| | ||| || |||||| |||| Sbjct 5047 CAAGGTTCGGCCATCTTCCAGTTGTTTGCCAGCGAAAATGAGACGTTGTTGATCTGGCGG 4988 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||||||| || | |||| || | |||||||||| || | Sbjct 4987 GATGCCTTCTTTGTCTTGAATTTTC-GTCTTTACATTTTCAATCGTGTCGCTTGGCTCAA 4929 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||||| || || || || ||||| || || ||||||||| Sbjct 4928 CTTCTAGAGTGATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCATA 4879 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||||| |||||||| || || || || || || ||||| || || Sbjct 5563 ACCACCACGTAGACGTAGAACCAAATGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGA 5504 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || |||| ||| || || ||||| || | ||| || |||||| | || Sbjct 5503 CAAGGTTCGACCATCTTCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGATCTGGTGG 5444 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||| || ||| | |||| || | |||||||||| || | Sbjct 5443 GATTCCTTCTTTGTCTTGAATCTT-TGTCTTCACATTCTCAATTGTGTCGCTTGCCTCAA 5385 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || |||||||| || || ||||| ||||| ||||||||| Sbjct 5384 CCTCAAGGGTAATAGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCATA 5335 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || || ||||| ||||||||||| || Sbjct 4879 ACCACCGCGAAGACGAAGAACCAAGTGAAGGGTTGATTCTTTCTGTATGTTGTAGTCACT 4820 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || || | |||||| || || || || | ||| || || ||| |||| Sbjct 4819 CAAAGTTCGGCCATCTTCGAGTTGTTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGCGG 4760 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||| ||| || | |||| || | || || || | ||| | Sbjct 4759 GATGCCTTCTTTGTCTTGAATCTTC-GTCTTTACATTCTCGATAGTATCACTGGGTTCAA 4701 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || ||||| ||||| |||||||| ||||| Sbjct 4700 CCTCAAGGGTGATAGTCTTGCCAGTTAAGGTTTTCACAAAGATTTGCAT 4652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328018747997760