Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq109567 127 2e-24 seq18521 89.7 5e-13 >seq109567 Length=8344 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | | | || ||||| || || |||||||| || ||| || |||||| Sbjct 5317 AACCAAATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGACAAGGTTCGACCATCTTC 5258 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || ||||| || | | || ||||||||||| ||||| || |||||||||||||| Sbjct 5257 CAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGGTCTGGCGGGATGCCTTCTTTATCTTG 5198 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| |||| | ||| | || ||| | ||||| ||||| | || | ||| || Sbjct 5197 AATTTTCGTCTTCACGTTTTCAATCGTGTCGCTTGGCTCAACTTCTAGAGTGATCGTCTT 5138 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| ||||| | |||||||||||| Sbjct 5137 GCCAGTCAAGGTTTTCACGAAAATCTGCAT 5108 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | | |||| ||||| || || |||||||| || ||| || |||||| Sbjct 5089 AACCAAATGAAGGGTTGATTCTTTCTGGATATTGTAGTCAGACAAGGTTCGGCCATCTTC 5030 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || ||||| || | | || ||||| ||||||||||| || ||||||||||| || Sbjct 5029 CAGTTGTTTGCCAGCGAAAATGAGACGTTGTTGATCTGGCGGGATGCCTTCTTTGTCTTG 4970 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| || | | ||| | || ||| | ||||| ||||| | || | ||| || Sbjct 4969 AATTTTCGTCTTTACATTTTCAATCGTGTCGCTTGGCTCAACTTCTAGAGTGATCGTCTT 4910 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| ||||| | |||||||||||| Sbjct 4909 GCCAGTCAAGGTTTTCACGAAAATCTGCAT 4880 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | | |||| || || || || |||||||| || ||| || |||||| Sbjct 5545 AACCAAATGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACAAGGTTCGACCATCTTC 5486 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || || || || | | |||| ||||| ||||||||||| || || |||||||| || Sbjct 5485 CAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTG 5426 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| ||| |||| | || | || ||| | | ||| || || | || | ||||| Sbjct 5425 AATCTTTGTCTTCACATTCTCAATTGTGTCGCTTGCCTCAACCTCAAGGGTAATAGTTTT 5366 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| ||||| | ||||||||||| Sbjct 5365 ACCAGTCAAGGTTTTCACAAAAATCTGCAT 5336 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | || ||||| ||||||||||| || || ||| || |||||| Sbjct 5773 AACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGACAGGGTTCGGCCATCTTC 5714 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || || || || | | |||| ||||| ||||| ||||| || || |||||||| || Sbjct 5713 CAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGGTCTGGTGGGATCCCTTCTTTGTCTTG 5654 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||||| | || | || ||| | | |||||||| | || | ||||| Sbjct 5653 AATTTTGGTTTTCACATTCTCAATGGTGTCGCTTGCTTCCACTTCTAGGGTTATTGTTTT 5594 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| ||||| | ||||||||||| Sbjct 5593 GCCAGTCAGGGTTTTCACAAAAATCTGCAT 5564 Score = 102 bits (112), Expect = 8e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | |||| ||||| || ||||||||||| |||| || || |||||| Sbjct 4861 AACCAAGTGAAGGGTTGATTCTTTCTGTATGTTGTAGTCACTCAAAGTTCGGCCATCTTC 4802 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||| ||||| || | |||| ||||| ||||| ||||| || ||||||||||| || Sbjct 4801 GAGTTGTTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGCGGGATGCCTTCTTTGTCTTG 4742 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || || | | || | |||||| | || || || || | || | || || Sbjct 4741 AATCTTCGTCTTTACATTCTCGATAGTATCACTGGGTTCAACCTCAAGGGTGATAGTCTT 4682 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATGACTTATTAGA 132134 ||||| | ||||| | || || |||||||| | |||| Sbjct 4681 GCCAGTTAAGGTTTTCACAAAGATTTGCATGACGAAATAGA 4641 >seq18521 Length=2728 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 146899 ACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAA 146958 || || ||||| || | | |||||||||| ||| | |||||||||| | || |||||| Sbjct 149 ACCTGGAACTCCCCTGATAACACACGTCTGGTATAAATATTGCTAGTGTATGGTTCAAAA 208 Query 146959 GACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCA 147010 || || || || |||||||| || ||||| | |||||||||||| ||||| Sbjct 209 GATTCGTTGTTTCCTAATATCTGAGCCGTTGACGCGGTAGGCATGGGCGCCA 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475592127805080