Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq109567 131 1e-25 >seq109567 Length=8344 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| ||||| ||||| || || | ||||| | || || ||| ||| Sbjct 4651 CATGCAAATCTTTGTGAAAACCTTAACTGGCAAGACTATCACCCTTGAGGTTGAACCCAG 4710 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||||||| | ||||| || ||| || ||||| || || ||||| || || Sbjct 4711 TGATACTATCGAGAATGTAAAGACGAAGATTCAAGACAAAGAAGGCATCCCGCCAGACCA 4770 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | ||||| | || ||||||||||||||||||| ||| | | || || ||||| Sbjct 4771 ACAACGTCTCATCTTCGCTGGCAAACAACTCGAAGATGGCCGAACTTTGAGTGACTACAA 4830 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || |||||||| ||| |||| || || Sbjct 4831 CATACAGAAAGAATCAACCCTTCACTTGGT 4860 Score = 113 bits (124), Expect = 4e-20 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA- 25233 ||||| | || || ||||| || || || || ||||||| | ||||| || ||||| Sbjct 4880 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATCACTCTAGAAGTTGA-GCCAAG 4938 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || || || | ||||| |||||| || ||||| || || ||||| ||||| Sbjct 4939 CGACACGATTGAAAATGTAAAGACGAAAATTCAAGACAAAGAAGGCATCCCGCCAGATCA 4998 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 ||| | ||||||| || ||||||||||| ||||||| ||| |||| || ||| Sbjct 4999 ACAACGTCTCATTTTCGCTGGCAAACAACTGGAAGATGGCCGAACCTTGTC--TGACTAC 5056 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||| || |||||||| ||| ||||||| || Sbjct 5057 AATATCCAGAAAGAATCAACCCTTCATTTGGT 5088 Score = 109 bits (120), Expect = 5e-19 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA- 25233 ||||| | || || ||||| || || || || ||||||| | ||||| || ||||| Sbjct 5108 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATCACTCTAGAAGTTGA-GCCAAG 5166 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || || || | || || |||||| |||||||| || || ||||| || || Sbjct 5167 CGACACGATTGAAAACGTGAAGACGAAAATTCAAGATAAAGAAGGCATCCCGCCAGACCA 5226 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 || | ||||||| || ||||||||||| ||||||| | ||| |||| || ||| Sbjct 5227 ACAGCGTCTCATTTTCGCTGGCAAACAACTGGAAGATGGTCGAACCTTGTC--TGACTAC 5284 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||| || |||||||| ||| ||||||| || Sbjct 5285 AATATCCAGAAAGAATCGACCCTTCATTTGGT 5316 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | || || ||| | || || | ||||| ||||| | | Sbjct 5564 ATGCAGATTTTTGTGAAAACCCTGACTGGCAAAACAATAACCCTAGAAGTGGAAGCAAGC 5623 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || ||| |||||| || ||||| || || || || || || Sbjct 5624 GACACCATTGAGAATGTGAAAACCAAAATTCAAGACAAAGAAGGGATCCCACCAGACCAA 5683 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||| | ||||| | | ||||| ||||| ||||||| ||| |||| | |||||| Sbjct 5684 CAACGTCTCATCTTTGCAGGCAAGCAACTGGAAGATGGCCGAACCCTGTCTG--ATTACA 5741 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383 | ||||| ||||||||||| |||| || || Sbjct 5742 ACATTCAGAAAGAATCCACTCTTCACTTGGT 5772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444142715844960