Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq109567 113 5e-20 >seq109567 Length=8344 Score = 113 bits (124), Expect = 5e-20 Identities = 151/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || || ||||| || || || |||||||| | ||| ||| || || || || || Sbjct 5310 TGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGACAA-GGTTCGACCATCTTCCAGTTG 5252 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 |||||| || ||||| | |||||| || || ||||| ||||||||||| ||||||| ||| Sbjct 5251 TTTGCCAGCGAAAATGAGACGCTGTTGGTCTGGCGGGATGCCTTCTTTATCTTGAA-TTT 5193 Query 134630 TTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 | || | || | |||| |||||| | || || || ||||| || || || || | Sbjct 5192 TCGTCTTCACGTTTTCAATCGTGTCGCTTGGCTCAACTTCTAGAGTGATCGTCTTGCCAG 5133 Query 134689 TTAAAGTTTTAACGAAAATTTGCAT 134713 | || ||||| |||||||| ||||| Sbjct 5132 TCAAGGTTTTCACGAAAATCTGCAT 5108 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || || |||||||| || || |||||||| | ||| ||| || || || || || Sbjct 5538 TGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACAA-GGTTCGACCATCTTCCAGTTG 5480 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||||||||| || | ||| || ||||| || || || |||||||| |||||||| || Sbjct 5479 CTTGCCTGCAAAGATGAGACGTTGTTGATCTGGTGGGATTCCTTCTTTGTCTTGAATCTT 5420 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 | || || || | ||||||| | || || || || ||||| |||||||| || Sbjct 5419 TGTCTTCACATTCTCAATTGTGTCGCTTGCCTCAACCTCAAGGGTAATAGTTTTACCAGT 5360 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || ||||| ||||| Sbjct 5359 CAAGGTTTTCACAAAAATCTGCAT 5336 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || || ||||| || || || |||||||| | ||| | | | | || || || || Sbjct 5082 TGAAGGGTTGATTCTTTCTGGATATTGTAGTCAGACAAGGTTCGGCCA-TCTTCCAGTTG 5024 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 |||||| || ||||| | ||| || ||||| ||||| ||||||||||| ||||||||||| Sbjct 5023 TTTGCCAGCGAAAATGAGACGTTGTTGATCTGGCGGGATGCCTTCTTTGTCTTGAATTTT 4964 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | |||||| | || || || ||||| || || || || || Sbjct 4963 CGTCTTTACATTTTCAATCGTGTCGCTTGGCTCAACTTCTAGAGTGATCGTCTTGCCAGT 4904 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| |||||||| ||||| Sbjct 4903 CAAGGTTTTCACGAAAATCTGCAT 4880 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || || | || | ||| || |||||||| || ||||||||||| || Sbjct 5793 TTTCCACCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCA 5734 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | ||| | || || || || ||||||||||| || | ||| || || || || Sbjct 5733 GACAGGGTTCGGCCATCTTCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGGTCTGGT 5674 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || |||||||| ||||||||||| ||| || || | |||||| | |||| Sbjct 5673 GGGATCCCTTCTTTGTCTTGAATTTTGGTTTTCACATTCTCAATGGTGTCGCTTGCTTCC 5614 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| || || | ||||| || ||||| ||||| Sbjct 5613 ACTTCTAGGGTTATTGTTTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 5564 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTGAGAGTCGTCGAGCT 134568 ||| || || ||||| || || ||||||||||| | ||| | | | | || ||||| | Sbjct 4855 GTGAAGGGTTGATTCTTTCTGTATGTTGTAGTCACTCAAAGTTCGGCCA-TCTTCGAGTT 4797 Query 134569 GTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTT 134628 ||||||| || || || | ||| || || || ||||| ||||||||||| |||||||| | Sbjct 4796 GTTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGCGGGATGCCTTCTTTGTCTTGAATCT 4737 Query 134629 TTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGG 134688 | || || || | || || | ||| || || || || || || || || | Sbjct 4736 TCGTCTTTACATTCTCGATAGTATCACTGGGTTCAACCTCAAGGGTGATAGTCTTGCCAG 4677 Query 134689 TTAAAGTTTTAACGAAAATTTGCAT 134713 |||| ||||| || || |||||||| Sbjct 4676 TTAAGGTTTTCACAAAGATTTGCAT 4652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504317776093560