Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq63152 170 3e-37 seq157723 145 1e-29 seq94289 86.0 9e-12 >seq63152 Length=2952 Score = 170 bits (188), Expect = 3e-37 Identities = 246/342 (72%), Gaps = 4/342 (1%) Strand=Plus/Minus Query 69829 CCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCC 69888 |||| ||| || || || ||| || ||| | ||| ||| ||||| || || || Sbjct 626 CCAGCAATGTAGCTCCCAAATGCTCGTATACAATGAATGCTTAGCCCTATACCACCAGCA 567 Query 69889 ATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCT 69948 |||| |||||||||||||| | | | | || ||| ||||| | || |||||||| || Sbjct 566 CTTTTTGAGATTAGAGCACATCTTGTTAGAGTCTCAAATATATCATCAATGCTATCTCCT 507 Query 69949 ATCATGTTAAGAAGAAAACAGCTAGACATTTGATGA-TGTATAGTTCCCGCATTAAATAA 70007 ||||| | |||||||||||| || | |||| ||| | || || |||||||| | Sbjct 506 GTCATGGCCAAAAGAAAACAGCTTGATAGTTGAGCTCTGT-TGGTACCAGCATTAAACAG 448 Query 70008 TGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGA 70067 ||| || ||||| || || |||||| ||||||| | || ||| || || ||||||| || Sbjct 447 TGTCGGTGATGCATGTGTAAACCATCTTTCAGACATCAAATTATAAGTACCAATAGCGGA 388 Query 70068 TTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTT 70126 || ||||| ||| ||| || || || | ||||||||||||||||| ||||||| || Sbjct 387 GTCAATATCTTCACC-ATGTATACCAATTGATACACGCATCAACATATGTTGAGGTCTTT 329 Query 70127 CTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168 | | |||| ||| | ||| || ||||| ||| | |||| Sbjct 328 CAGCAATTTTTCCATTGAGTTTTAAAAGGTAAGATCTCTCCA 287 >seq157723 Length=4480 Score = 145 bits (160), Expect = 1e-29 Identities = 194/268 (72%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 39806 GCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGT 39865 |||||||| ||||||||| | |||||||| | || || ||||| |||||| | | Sbjct 3023 GCCCAATCTGCTTTCTTCCTAACACAAGGGAGATGCTCAATGGCATTGAAGAGACGTTCT 3082 Query 39866 TTTTCATCACTATCT--TTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923 ||| |||| || || | ||||||||||| | ||||||||||| |||||||||| Sbjct 3083 CGTTC--CACTGGCTCCTTGATGTATGTATCTATGAGTAGACTATACATCTCTGAATGGA 3140 Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983 ||||||| || || || || || || ||||| || | ||||| | | |||||| ||| Sbjct 3141 TGTTTTCCATTGCTATTTGGAAACCATAAAAGCAACGAGCTTCTGGCACTTGTACTTCTT 3200 Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 | || | || |||| ||||||||||| || |||||||| || ||||| || || | Sbjct 3201 GTGAGAAACACTCAACCAAGTTTTCATTCACAATACCATCACTGGCAGCAAAGAAGGCTA 3260 Query 40044 ATACATGTTTAATAAAATATTTTTCATC 40071 | | ||| || |||| | ||||||| Sbjct 3261 AGATATGAGAGATGAAATGTCTTTCATC 3288 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | || || || || || | |||||||| || ||||| || || Sbjct 2782 TCATCTCTGCTTATGAGCTCATTGGAGAAAGTTAAACCAGGCATAAGGCCACGTTTCTTC 2841 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 |||||||| || | ||||| ||||| || |||||||||||||| || || ||||| || Sbjct 2842 AGCCAAAAGATAGATGCAAATGATCCTGAGAAGAAGATGCCTTCAACAGCAGCAAAAGCT 2901 Query 39761 ACAAGTCTCTCTCC 39774 |||| |||||| || Sbjct 2902 ACAATTCTCTCACC 2915 Score = 93.3 bits (102), Expect = 6e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 |||||||| ||||||||||| ||||| | |||||| ||||| ||||| || ||||| Sbjct 2499 AATCTATCAGCAACAAATTCAATGTAAACTCTCATCAAATCACAGTTCATGCCAATGAGC 2558 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 ||||| ||||| || |||| || |||| ||| || | || || || || ||| Sbjct 2559 CGCACTGGAAGAGCGTCTGTTAAGAATTCTTGTTCAATCTTCACAGCATCATCAATGATC 2618 Query 39566 GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAG 39625 ||||| ||| ||| ||| || | |||||||| |||| ||||| || || Sbjct 2619 TTCTTTACTTTCTCTTCAGATGGTTTATTCTTCAAATGTTTGTACATCAAGCAAGCAAAA 2678 Query 39626 TCACAATGTAGGCCCTCAT 39644 ||||| || || |||| || Sbjct 2679 TCACAGTGGAGACCCTGAT 2697 >seq94289 Length=1197 Score = 86.0 bits (94), Expect = 9e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 70351 GTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGT 70410 ||||||||||||||||| || | || ||||| || ||||| | |||||||| |||||| Sbjct 1188 GTTTCCTTGTGTAAATTCGAGGTTGCAATTCTAGCAGCTAGGGTGGCATAGTCGGGATGT 1129 Query 70411 TGTGTAGTACAAGTA-GCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAAC 70469 | || || || | | || || |||| |||||||| ||||| | ||| |||||| || Sbjct 1128 TTGGTTGT-CATGGATGCAGCAGTTTCTGCAGCTAAAGTATCAAGCTCTGAAGTTGTTAC 1070 Query 70470 TCCGTTATATAGCCCTTGAATAACTTTCATGGCTAT 70505 ||| ||| | || || |||||||| | ||| Sbjct 1069 TCCACCATAGACACCAGAAACCACTTTCATTGTTAT 1034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685440077362920