Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_027996.1 Length=175720 Score E Sequences producing significant alignments: (Bits) Value seq14455 145 9e-30 seq14454 145 9e-30 >seq14455 Length=1418 Score = 145 bits (160), Expect = 9e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 8091 AAAGTTAAACTTATCTATATTGACCCACCTTATAATACAGGCAATACTAGTTTTAATTAT 8150 ||| | ||||| ||||| || |||||||| || || || ||||||| || |||| ||| Sbjct 1368 AAAATAAAACTCATCTACATAGACCCACCGTACAACACTGGCAATAATAATTTTGTTTAC 1309 Query 8151 AACGACAAATTTAAACACACTACTTGGCTTACT-TTTATGAAAAATCGCCTTGAAATTGC 8209 ||||| || ||||| |||| || ||| ||| | ||||||||||| || | ||| | || Sbjct 1308 AACGATAATTTTAATCACAGCACATGG-TTAGTGTTTATGAAAAACCGATTAGAAGTAGC 1250 Query 8210 TAGAGAATTTTTAAGAGATGATGGTGTAATATTCGTTCAATGTGACGATAATGAACAAGC 8269 | | ||| | | |||||||| || || || || ||||| || || || |||||||| Sbjct 1249 AAAAACATTGCTGCGTGATGATGGCGTTATTTTTGTGCAATGCGATGACAACGAACAAGC 1190 Query 8270 ATATTTAAAAGTACTTATGGATGAGATATTTGGTAGAGAGAATTTTGTTAAT 8321 || | || || || |||||||| | ||||| |||||||||||||| ||| Sbjct 1189 CTACCTGAAGGTGCTCATGGATGAAGTGTTTGGGAGAGAGAATTTTGTGAAT 1138 Score = 131 bits (144), Expect = 2e-25 Identities = 155/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 8880 GACATAGTAATGGAtttttttGCGGGAAGTGGCACTACTCTAGCCGTTGCTCATAAAATG 8939 ||||| ||| | ||||||||| || |||||||||||| || ||||| || |||||| Sbjct 588 GACATTGTACTAGATTTTTTTCTTGGCAGTGGCACTACTTGTGCAGTTGCACACAAAATG 529 Query 8940 AAACGCAAATGGATAGGCATAGAACAAATGGATTATATAGAAACTATCACAAAAGAAAGA 8999 | | ||| |||||||||||||||||||| || ||| |||| | | |||| || Sbjct 528 GGAAGACAATACATAGGCATAGAACAAATGGACTACATAAAAACCGTAGCCGTAGAACGA 469 Query 9000 CTCaaaaaaaGTCATAGAAGGTGAGCAAGGTGGTATCAGCAAAGCAATAAATTGGCAAGG 9059 || ||||||||| || || || || ||||| || || || ||| || | | |||||||| Sbjct 468 CT-AAAAAAAGTTATTGATGGCGAACAAGGAGGCATAAGTAAAACAGTGCAATGGCAAGG 410 Query 9060 TGGTGGAAATTTTGTTTATGCTGAACTTA 9088 ||| || | ||||| || |||||||| Sbjct 409 TGGAGGCGACTTTGTCTACTGTGAACTTA 381 >seq14454 Length=5724 Score = 145 bits (160), Expect = 9e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 8091 AAAGTTAAACTTATCTATATTGACCCACCTTATAATACAGGCAATACTAGTTTTAATTAT 8150 ||| | ||||| || || || ||||| || || || || ||||||| || |||| ||| Sbjct 5674 AAAATAAAACTCATTTACATAGACCCCCCGTACAACACTGGCAATAATAATTTTGTTTAC 5615 Query 8151 AACGACAAATTTAAACACACTACTTGGCTTACT-TTTATGAAAAATCGCCTTGAAATTGC 8209 || || || ||||| |||| || ||| ||| | ||||||||||| || | ||| | || Sbjct 5614 AATGATAATTTTAATCACAGCACATGG-TTAGTGTTTATGAAAAACCGATTAGAAGTAGC 5556 Query 8210 TAGAGAATTTTTAAGAGATGATGGTGTAATATTCGTTCAATGTGACGATAATGAACAAGC 8269 | | ||| | | |||||||| || || ||||| ||||| || || || |||||||| Sbjct 5555 AAAAACATTACTGCGGGATGATGGCGTTATTTTCGTGCAATGCGATGACAACGAACAAGC 5496 Query 8270 ATATTTAAAAGTACTTATGGATGAGATATTTGGTAGAGAGAATTTTGTT 8318 || |||| ||||| |||||||| | ||||| ||||||||||||||| Sbjct 5495 CTACCTAAAGGTACTCATGGATGAAGTGTTTGGGAGAGAGAATTTTGTT 5447 Score = 125 bits (138), Expect = 8e-24 Identities = 154/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 8880 GACATAGTAATGGAtttttttGCGGGAAGTGGCACTACTCTAGCCGTTGCTCATAAAATG 8939 || || ||| | ||||||||| || |||||||||||| || ||||| || |||||| Sbjct 4921 GATATTGTACTAGATTTTTTTCTTGGCAGTGGCACTACTTGTGCAGTTGCACACAAAATG 4862 Query 8940 AAACGCAAATGGATAGGCATAGAACAAATGGATTATATAGAAACTATCACAAAAGAAAGA 8999 | | ||| |||||||||||||||||||| || ||| |||| | | |||| || Sbjct 4861 GGAAGACAATACATAGGCATAGAACAAATGGACTACATAAAAACCGTAGCCGTAGAACGA 4802 Query 9000 CTCaaaaaaaGTCATAGAAGGTGAGCAAGGTGGTATCAGCAAAGCAATAAATTGGCAAGG 9059 || ||||||||| || || || || ||||| || || || ||| | | | |||||||| Sbjct 4801 CT-AAAAAAAGTTATTGATGGCGAACAAGGGGGCATAAGTAAAAAAGTTCAATGGCAAGG 4743 Query 9060 TGGTGGAAATTTTGTTTATGCTGAACTTA 9088 ||| || | ||||| ||| |||||||| Sbjct 4742 TGGAGGCGACTTTGTCTATTGTGAACTTA 4714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560973976358400