Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq109567 161 1e-34 seq56214 84.2 2e-11 >seq109567 Length=8344 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || | || || || |||||||| |||||||||||| || | Sbjct 5336 ATGCAGATTTTTGTGAAAACCTTGACTGGTAAAACTATTACCCTTGAGGTTGAGGCAAGC 5395 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| ||||| | || ||||| ||||| || ||||| || ||||| || Sbjct 5396 GACACAATTGAGAATGTGAAGACAAAGATTCAAGACAAAGAAGGAATCCCACCAGATCAA 5455 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| || |||||||| || |||| ||| ||| | | ||||| ||| Sbjct 5456 CAACGTCTCATCTTTGCAGGCAAGCAACTGGAAGATGGTCGAACCTTGTCTGACTACAAT 5515 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || |||||| | || | ||||| || ||||| Sbjct 5516 ATCCAGAAGGAATCAACCCTTCATTTGGTTCTACGTCTACGTGGTGG 5562 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || | || ||||||||||| || ||||||||||| | || Sbjct 4652 ATGCAAATCTTTGTGAAAACCTTAACTGGCAAGACTATCACCCTTGAGGTTGAACCCAGT 4711 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||| | || ||||| ||||| || || || || |||||||| Sbjct 4712 GATACTATCGAGAATGTAAAGACGAAGATTCAAGACAAAGAAGGCATCCCGCCAGACCAA 4771 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || ||||| || |||||||| |||| || || | ||||| || Sbjct 4772 CAACGTCTCATCTTCGCTGGCAAACAACTCGAAGATGGCCGAACTTTGAGTGACTACAAC 4831 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || ||||| || ||||| | || | |||||||||||||| Sbjct 4832 ATACAGAAAGAATCAACCCTTCACTTGGTTCTTCGTCTTCGCGGTGG 4878 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || || || ||||| || || || || || || || || | Sbjct 5564 ATGCAGATTTTTGTGAAAACCCTGACTGGCAAAACAATAACCCTAGAAGTGGAAGCAAGC 5623 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| |||| | |||||||| ||||| || || || || |||||||| Sbjct 5624 GACACCATTGAGAATGTGAAAACCAAAATTCAAGACAAAGAAGGGATCCCACCAGACCAA 5683 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| || |||||||| || |||| || ||||| | || || || Sbjct 5684 CAACGTCTCATCTTTGCAGGCAAGCAACTGGAAGATGGCCGAACCCTGTCTGATTACAAC 5743 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || || |||||||||||||| | || | |||||||| |||||| Sbjct 5744 ATTCAGAAAGAATCCACTCTTCACTTGGTTCTCCGTCTTCGTGGTGGA 5791 >seq56214 Length=996 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || |||||||||||||| ||| | |||||||||| || || || | ||||||| || Sbjct 663 GGCATTCCTCCAGACCAACAGAGGTTAATTTTTGCCGGCAAACAGTTGGAGGATGGCCGA 604 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||| | || |||||| |||| || |||||||| |||||||| || | || | || Sbjct 603 ACCTTGAGTGATTATAATATCCAGAAAGAATCCACCCTTCATCTTGTGCTCCGATTACGA 544 Query 27628 GGTGGA 27633 |||||| Sbjct 543 GGTGGA 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569090983689360