Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq109567 138 7e-28 >seq109567 Length=8344 Score = 138 bits (152), Expect = 7e-28 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || |||||| || || |||||||| ||||| || Sbjct 5790 CCACCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGAC 5731 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | ||||| ||||| || || ||||| || | ||| |||||||| || || Sbjct 5730 AGGGTTCGGCCATCTTCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGGTCTGGTGGG 5671 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCT-TCGCTCTCCA 34657 | || || |||||| ||| ||| ||||| || | ||| ||||| | ||| |||| Sbjct 5670 ATCCCTTCTTTGTCT-TGAATTTTGGTTTTCACATTCTCAATGGTGTCGCTTGCT-TCCA 5613 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | |||||| ||||| || || | |||||||||||||||||||| Sbjct 5612 CTTCTAGGGTTATTGTTTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 5564 Score = 113 bits (124), Expect = 3e-20 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| || || ||||| || || || || || || | ||||| Sbjct 5553 AGACGTAGAACCAAATGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACAAGGTTCGA 5494 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||| || || ||||| || | ||| ||||| || || || | ||| || Sbjct 5493 CCATCTTCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGATCTGGTGGGATTCCTTCT 5434 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCT-TCGCTCTCCACTTCCACGG 34666 |||||| |||||| || || || | ||||||||| | || ||| || || | || Sbjct 5433 TTGTCTTGAATCTTT-GTCTTCACATTCTCAATTGTGTCGCTTGC-CTCAACCTCAAGGG 5376 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || |||||||| || || |||||||||||||||||||| Sbjct 5375 TAATAGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCAT 5336 Score = 102 bits (112), Expect = 5e-17 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| || || || || || || || || || || | ||||| Sbjct 5325 AGACGTAGAACCAAATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGACAAGGTTCGA 5266 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| |||||||| || || || || | |||||||||||| ||||| | || || Sbjct 5265 CCATCTTCCAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGGTCTGGCGGGATGCCTTCT 5206 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGT--CTTCGCTCTCCACTTCCACG 34665 || ||| ||| ||| || || ||| | ||| |||| ||| | ||| ||||| | Sbjct 5205 TTATCT-TGAATTTTCGTCTTCACGTTTTCAATCGTGTCGCTTGG--CTCAACTTCTAGA 5149 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || || || |||||||| ||||||||||| Sbjct 5148 GTGATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 5108 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| || || || || || || || || || || | ||||| Sbjct 5097 AGACGTAGAACCAAATGAAGGGTTGATTCTTTCTGGATATTGTAGTCAGACAAGGTTCGG 5038 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| |||||||| || || || || | ||| ||||| || ||||| | || || Sbjct 5037 CCATCTTCCAGTTGTTTGCCAGCGAAAATGAGACGTTGTTGATCTGGCGGGATGCCTTCT 4978 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTC--TTCGCTCTCCACTTCCACG 34665 |||||| ||| ||| || || || | ||| ||||| || |||| ||||| | Sbjct 4977 TTGTCT-TGAATTTTCGTCTTTACATTTTCAATCGTGTCGCTTGGCTCA--ACTTCTAGA 4921 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || || || |||||||| ||||||||||| Sbjct 4920 GTGATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 4880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314073480547349