Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_028853.1 Length=50078 Score E Sequences producing significant alignments: (Bits) Value seq22746 347 4e-91 >seq22746 Length=1146 Score = 347 bits (384), Expect = 4e-91 Identities = 728/1081 (67%), Gaps = 3/1081 (0%) Strand=Plus/Minus Query 38598 ATTTGTAGAAGATCAAACCTAATCTGACAGTCCCCCGTTTTAAATTACCGTGTCTGTCAG 38657 || ||||||| ||| |||| | |||||||| | |||| || | ||||||||||| Sbjct 1145 ATGTGTAGAAATTCAGACCTGACCTGACAGTTACGGATTTTCAAGAAG-GTGTCTGTCAG 1087 Query 38658 ATTAATTTGAGCTTAAATTCTTTTCCACCCAAATCCGTTTTCCATCAAGTAAGGTTGCCA 38717 | || || || || ||||||| ||| ||| ||| ||||||| | ||| | | Sbjct 1086 GTCAAATTCAGGCTATGAACTTTTCCTTCCAGATCTCTTTCCCATCAATCAGTGTTTCTA 1027 Query 38718 TCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATGGTGATTATAATACATTA 38777 |||| ||| | || ||| | || |||||||| || || | ||| || | || | Sbjct 1026 TCGGCGTTTTCCCGTCACACTTCTTACCTTGATGGGTACGCTCAGTATTGTAGTGAATCA 967 Query 38778 ACCACTCATCTAAATCCGCTTGTAATGTCGTTAAATCCGTATAAATTTTCTTCCTAAATG 38837 |||| || || | ||| | ||| | || | | |||||| | |||| || |||| Sbjct 966 ACCATTCGTCCAGATCTGATTGAATCATCTCAATACTCGTATACAGCGTCTTTCTCAATG 907 Query 38838 CCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATACCATTCGTCT 38897 | ||| ||||| || || | || ||||||||||| || || ||||| |||||||| | Sbjct 906 CAGGTTGATAAAACTCCTGCAGAATCGTTTTATGGAAGCGCTCACAGATTCCATTCGTTT 847 Query 38898 GGGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTTATCGCTAAATAAAGCTCAT 38957 | |||||| ||||||| ||||||||||| ||||| || | ||||| ||||| | || Sbjct 846 GCGGATGCCGGGCTTTCGTCTTCGTATGCTCAATGTCGTTAACCGCTAGGTAAAGTTGAT 787 Query 38958 AATCGTGATTTTCTACCTTG-CCACAATATTCACTTCCTCGGTCAGTTAATATGCGTAAC 39016 | || || | || | || | |||||||| || | |||| ||| || | ||| | | Sbjct 786 AGTCATGTTGATC-AGCTCGACCACAATACTCCGTACCTCTGTCTGTCAGTATTCTGAGT 728 Query 39017 ATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAGCA 39076 | || | | ||| |||| | | || || || ||||| |||| ||| ||||| Sbjct 727 ACAGGCAGCTCCTGGGCTTCATAAAACGGCAATACACGGTCATTGAGCAGATCAGCAGCC 668 Query 39077 CTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTATCAATA 39136 | |||| ||||| ||||||| || || || ||| || || ||||||||||| | Sbjct 667 GTAATAGGCGTCTTGGTTGTATACAGCTTGGCCTGCGCTACCTTGGAGTAAGTATCAACA 608 Query 39137 AACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGT 39196 | || || ||||||| ||| || || ||||||| |||| |||||||| || |||||| Sbjct 607 TAGGTCTGCTGATAAACACGTCCAACGCCTTTGAATGTGCCAACATAGAAGGTGTCTTGT 548 Query 39197 GAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCACAGGCAATCTCATCTTCTTTC 39256 || ||||| || ||||| ||| | || ||||||||||||||||| ||||| |||| Sbjct 547 GAACCAAGGTAACCAGGATGTGCTGTATCAATTTCACCACAGGCTTCATCATCCAGTTTC 488 Query 39257 TTACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTATAATACCTTGTTCTGCAACCAGT 39316 |||||||| | || ||||||| || |||| || | |||| || || ||| Sbjct 487 TTACGCTCAAGCGCCCTGACCTGTGACTCGGTGAGAATGACCCCTTCTTGAGCCACCTTC 428 Query 39317 TTTTCCAGGGCGATTAATCTTTGCTTAAAATTGGCAAGATGATGACGTAACCAAATCGAA 39376 | || ||||| | | | | ||||| | | |||| || | | ||| || Sbjct 427 TCCTCGAGGGCTTTGAGGCGCAGTTTAAAGCTTCCCAGATCATTTCTCAGCCAGATACTT 368 Query 39377 CGTACACCTCCTGCTGAAACAAAGATGCCTTGTTTACGGAGTTCCTTACTCACTCTTACC 39436 | || || | | ||||| |||||||||| || || ||||| || || | || Sbjct 367 CTCACGCCGCTGGGAGAAACGAAGATGCCTTTCTTGCGAAGTTCATTGGAAACACGGGCC 308 Query 39437 TGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACAACAGCTTGCTCTATTGCCTCATCA 39496 |||||| || || | || | ||| ||| | ||| || | || | || || Sbjct 307 TGTCCATGGGCAGGATCTTCTATCGCATACTCAAGAACTGCCTTTTCAACAGCGGGGTCT 248 Query 39497 ACACGATTTTTTAAGTTGGGAACGCGTCTATTTTGATTCAGCAATGCTTCAACACCACCT 39556 ||||| ||||| | ||| ||||| | || |||||| || | |||||| || || ||| Sbjct 247 ACACGGTTTTTAAGGTTTGGAACTCTTCGGCTTTGATCAAGAAGTGCTTCCACTCCTCCT 188 Query 39557 TGCTCAACCGCTTGTTGATAACGATAGAATGTATCTCGGCTCATTCCCATTACTTTGCAG 39616 | || || || | | ||||| || |||||||||| | | ||||| ||| ||| Sbjct 187 TCATCCACAGCATCCCGGTAACGGTAAAATGTATCTCTGGAGACACCCATGGTTTTACAG 128 Query 39617 GCTTGAGAAATATTACCCAGTTCTTCTGCTAAATTTAATAAACCGGTCTTGTGTTTAATG 39676 |||| ||| || || || ||||| ||||| | || | || ||| |||||| |||||| Sbjct 127 GCTTTAGAGATGTTTCCGAGTTCATCTGCAAGGTTCAGTAGCCCGACCTTGTGCTTAATG 68 Query 39677 A 39677 | Sbjct 67 A 67 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159802739299440