Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq3816 125 6e-24 >seq3816 Length=23136 Score = 125 bits (138), Expect = 6e-24 Identities = 276/408 (68%), Gaps = 22/408 (5%) Strand=Plus/Minus Query 126080 ATGATTGGAATAAATATGTGCATCTCCAAATGTATGAATGAATTCACCCACCTCAAGTCC 126139 ||||||| ||||||||| || |||||||| || |||||||||||||| | | || Sbjct 18997 ATGATTGTTATAAATATGAGCGTCTCCAAAAGTGTGAATGAATTCACCAGGTTTGAAGCC 18938 Query 126140 ACATTCTTTTGC-AACAAGATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACAC 126198 ||| | | ||| | || || | || || ||| ||| || ||||| || ||||| | Sbjct 18937 ACACACCTGTGCGATCATGA-GGGTAAGCAAACTATAGGAAGCTATATTAAACGGAACTC 18879 Query 126199 CTAAAAATATATCAGCACTTCTTTGATATAATTGACAATTTAAT---TTACCCTCTTGTA 126255 ||| ||| ||||||||| | ||| ||||||||||| |||| ||| | | | Sbjct 18878 CTAGAAAGGCATCAGCACTACGTTGGTATAATTGACAGGATAATTCGTTATTTACATTAA 18819 Query 126256 CGTAAAATTGAAACATTGTGTGGCAAGGTGGTAATGCCATTGAATCGATTTCAGTAGGAT 126315 | ||||| || | | | |||||||| ||||| |||||| ||||| || || |||| Sbjct 18818 CATAAAACTGTATGAAGGCATGGCAAGGAGGTAAAGCCATTTTTTCGATATCTGTTGGAT 18759 Query 126316 TCCATGCTGAAACAATGTGACGTCGAGAGTTTGGATT-GGTTTTAATTTGTTGTATAACT 126374 | || || || || || || || || | |||||| | |||||| |||| ||| | Sbjct 18758 TTCAAGCGCTAATGATATGCCGACGTGAATATGGATTAGTTTTTAAATTGTGAATTAAAT 18699 Query 126375 GATTTTAATTGATCGTAATGATTTCCATTTTTATCTTCCCAATCTCTCCATTGTTTACCA 126434 |||||| | | || | | ||||| |||||| ||||||||||||| Sbjct 18698 --TTTTAA--GCTGGTCACAA---CCATT---------AAAATCTCGCCATTGTTTACCA 18655 Query 126435 TAAACATTCCCTAAGTTGCCATATTTTTTAGCAAATGCATCATCGTTT 126482 || || || || | || || ||||||||||| ||||||||| Sbjct 18654 TATACGGGTCCCAAATCTCCCCATAATTTAGCAAATGATTCATCGTTT 18607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407746591467971