Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq109567 150 4e-31 >seq109567 Length=8344 Score = 150 bits (166), Expect = 4e-31 Identities = 169/225 (75%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||||||||| ||||| || ||||| ||||| | ||||| Sbjct 5785 ACGAAGACGGAGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGACAGGGT 5726 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||| ||||||||||| ||||| || ||||||||||| || || | || Sbjct 5725 TCGGCCATCTTCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGGTCTGGTGGGATCCC 5666 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTC 211069 ||| ||||| || || || |||||| || || |||||||| ||| ||| || || Sbjct 5665 TTCTTTGTCTTGAATTTTGGTTTTCACATTCTCAATGGTGTC---GCTTGCTTCCACTTC 5609 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || || || || || ||||| | |||||| Sbjct 5608 TAGGGTTATTGTTTTGCCAGTCAGGGTTTTCACAAAAATCTGCAT 5564 Score = 127 bits (140), Expect = 5e-24 Identities = 166/226 (73%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || | ||| || | ||||| || || ||||| ||||| || || || | | ||| Sbjct 5329 ACGTAGACGTAGAACCAAATGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGACAAGGT 5270 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||| || ||||| ||||| || || || |||||||| || || | || Sbjct 5269 TCGACCATCTTCCAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGGTCTGGCGGGATGCC 5210 Query 211013 TTCCTTGTCCTGGATCTTTTGT-TTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCT 211068 ||| || || || || ||| || ||||||||||| || ||||| |||| ||||| | Sbjct 5209 TTCTTTATCTTGAAT-TTTCGTCTTCACGTTTTCAATCGTGTC---GCTTGGCTCAACTT 5154 Query 211069 CGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | |||||||||||||| || || | || || || || | |||||| Sbjct 5153 CTAGAGTGATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 5108 Score = 127 bits (140), Expect = 5e-24 Identities = 164/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || | ||| || | ||||| || || || || ||||| || || || | | ||| Sbjct 5557 ACGTAGACGTAGAACCAAATGAAGGGTTGATTCCTTCTGGATATTGTAGTCAGACAAGGT 5498 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||| ||||||||||| ||||| || |||||||| || || || | ||| Sbjct 5497 TCGACCATCTTCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGATCTGGTGGGATTCC 5438 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTC 211069 ||| ||||| || |||||| ||||| || || || ||||| |||| |||||||| Sbjct 5437 TTCTTTGTCTTGAATCTTTGTCTTCACATTCTCAATTGTGTC---GCTTGCCTCAACCTC 5381 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || || | || || ||||| | |||||| Sbjct 5380 AAGGGTAATAGTTTTACCAGTCAAGGTTTTCACAAAAATCTGCAT 5336 Score = 123 bits (136), Expect = 6e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGT 210952 ||||| | || || | |||||| || || ||||| || ||||| || || | ||| | | Sbjct 4872 CGAAGACGAAGAACCAAGTGAAGGGTTGATTCTTTCTGTATGTTGTAGTCACTCAAAGTT 4813 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || || ||||| |||||||| || ||||||||||| || || | || Sbjct 4812 CGG-CCATCTTCGAGTTGTTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGCGGGATGCC 4754 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| || ||||| || || || ||||| || ||| | ||||||||| || Sbjct 4753 TTCTTTGTCTTGAATCTTCGTCTTTACATTCTCGATAGTATCACTGGGTTCAACCTCAAG 4694 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || | || || ||||| | ||||| Sbjct 4693 GGTGATAGTCTTGCCAGTTAAGGTTTTCACAAAGATTTGCAT 4652 Score = 122 bits (134), Expect = 2e-22 Identities = 165/226 (73%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || | ||| || | ||||| || || ||||| ||||| || || || | | ||| Sbjct 5101 ACGTAGACGTAGAACCAAATGAAGGGTTGATTCTTTCTGGATATTGTAGTCAGACAAGGT 5042 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||||||||| || ||||| ||||| || || |||||||| || || || | || Sbjct 5041 TCGGCCATCTTCCAGTTGTTTGCCAGCGAAAATGAGACGTTGTTGATCTGGCGGGATGCC 4982 Query 211013 TTCCTTGTCCTGGATCTTTTGT-TTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCT 211068 ||| ||||| || || ||| || || || ||||| || ||||| |||| ||||| | Sbjct 4981 TTCTTTGTCTTGAAT-TTTCGTCTTTACATTTTCAATCGTGTC---GCTTGGCTCAACTT 4926 Query 211069 CGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | |||||||||||||| || || | || || || || | |||||| Sbjct 4925 CTAGAGTGATCGTCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 4880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1156611583278345