Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq109567 141 2e-28 seq6160 95.1 3e-14 seq123644 91.5 4e-13 seq18472 84.2 5e-11 >seq109567 Length=8344 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||| || || |||||||| || | ||||| || ||||||| Sbjct 4872 CGAAGACGAAGAACCAAGTGAAGGGTTGATTCTTTCTGTATGTTGTAGTCACTCAAAGTT 4813 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| || || || ||||||||||| || ||||||||||| ||||| || ||| Sbjct 4812 CGGCCATCTTCGAGTTGTTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGCGGGATGCCT 4753 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || |||||||| ||||| ||| ||| ||||| || || || ||| || || | Sbjct 4752 TCTTTGTCTTGAATCTTCGTCTTTACATTCTCGATAGTATCACTGGGTTCAACCTCAAGG 4693 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || || ||||| | || | |||||| Sbjct 4692 GTGATAGTCTTGCCAGTTAAGGTTTTCACAAAGATTTGCAT 4652 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || |||||||| |||| |||||| || | ||| |||| |||||||| || || Sbjct 5082 TGAAGGGTTGATTCTTTCTGGATATTGTAGTCAGACAAGGTTCGGCCATCTTCCAGTTGT 5023 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || |||||||| || || |||||||| || ||||| || ||||| |||||||| || || Sbjct 5022 TTGCCAGCGAAAATGAGACGTTGTTGATCTGGCGGGATGCCTTCTTTGTCTTGAATTTTC 4963 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| ||| || ||||| | || || |||| |||||||||||||| ||| Sbjct 4962 GTCTTTACATTTTCAATCGTGTCGCTTGGCTCAACTTCTAGAGTGATCGTCTTGCCAGTC 4903 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 || ||||| | ||| | ||||| Sbjct 4902 AAGGTTTTCACGAAAATCTGCAT 4880 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || |||||||| |||| |||||| || | ||| |||| |||||||| || || Sbjct 5310 TGAAGGGTCGATTCTTTCTGGATATTGTAGTCAGACAAGGTTCGACCATCTTCCAGTTGT 5251 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || |||||||| || || || |||||||| ||||| || ||||| || ||||| || || Sbjct 5250 TTGCCAGCGAAAATGAGACGCTGTTGGTCTGGCGGGATGCCTTCTTTATCTTGAATTTTC 5191 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 |||||| ||| || ||||| | || || |||| |||||||||||||| ||| Sbjct 5190 GTCTTCACGTTTTCAATCGTGTCGCTTGGCTCAACTTCTAGAGTGATCGTCTTGCCAGTC 5131 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 || ||||| | ||| | ||||| Sbjct 5130 AAGGTTTTCACGAAAATCTGCAT 5108 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| |||||||||||||| || | |||||||| | || || Sbjct 5785 ACGAAGACGGAGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCAGACAGGGT 5726 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| || ||||| || || ||||| || ||||||||||| || || || || Sbjct 5725 TCGGCCATCTTCCAGTTGCTTGCCTGCAAAGATGAGACGTTGTTGGTCTGGTGGGATCCC 5666 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||| || || |||||| || |||||||| | |||||| |||| Sbjct 5665 TTCTTTGTCTTGAATTTTGGTTTTCACATTCTCAATGGTGTCGCTTGCTTCCACTTCTAG 5606 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || || ||||| |||| ||||| Sbjct 5605 GGTTATTGTTTTGCCAGTCAGGGTTTT 5579 >seq6160 Length=10982 Score = 95.1 bits (104), Expect = 3e-14 Identities = 98/127 (77%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| || ||||||||||||| ||||||||||| | | Sbjct 6255 TGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGTCC 6196 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| | || |||||||| ||| || || | || Sbjct 6195 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCATACTACTCAGGCGGAGTACTTAATGC 6136 Query 7855 GTTAGCT 7861 ||||||| Sbjct 6135 GTTAGCT 6129 >seq123644 Length=133 Score = 91.5 bits (100), Expect = 4e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 7627 GGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGG 7686 || ||||| ||||| || || || | ||||||||||| ||||||||||| ||||| || Sbjct 133 GGATTCGGGAATTGGTTTGTACCAATTATGATTGGTGCACCTGATATGGCCTTTCCTAGA 74 Query 7687 CTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731 | ||| |||| ||||| || |||||||| ||||| ||| | ||| Sbjct 73 TTAAACTATATCAGTTTCTGGTTACTACCACCTTCTTTAATCCTA 29 >seq18472 Length=11437 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 5019 CTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGT 5078 || || || || || ||||| | ||||||| ||| ||||||| || |||||||| || Sbjct 1965 CTCCAGTATCTAGCTCCATATTCTGGTTGTGCTATGGGAGAATTCTTCAGAGATAACGGA 1906 Query 5079 AAACATGCTTTAATCATCTACGATGATTTAAGTAAACAA 5117 ||||||||| | || ||||||||||||||| |||||| Sbjct 1905 AAACATGCTCTGATTATCTACGATGATTTATCAAAACAA 1867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1189917628870782