Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq63152 143 4e-29 seq157723 122 1e-22 >seq63152 Length=2952 Score = 143 bits (158), Expect = 4e-29 Identities = 241/348 (69%), Gaps = 8/348 (2%) Strand=Plus/Minus Query 78237 CCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCC 78296 |||| ||| || || ||| ||| || ||| | |||| || |||||| || || || Sbjct 626 CCAGCAATGTAGCTCCCAAATGCTCGTATACAATGAATGCTTAGCCCTATACCACCAGCA 567 Query 78297 ATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCC 78356 | || || |||||||| || | | | | || || | ||| | || || || || | Sbjct 566 CTTTTTGAGATTAGAGCACATCTTGTTAGAGTCTCAAATATATCATCAATGCTATCTCCT 507 Query 78357 ATCATGTTAAGAAGAAAACAGCTAGACATTTGA----TGATGAACAGTTCCTGCATTAAA 78412 ||||| | |||||||||||| || | |||| || || || || |||||||| Sbjct 506 GTCATGGCCAAAAGAAAACAGCTTGATAGTTGAGCTCTGTTG----GTACCAGCATTAAA 451 Query 78413 TAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGC 78472 | |||||| |||||||| ||||||||| ||||||| | | ||| || || ||||||| Sbjct 450 CAGTGTCGGTGATGCATGTGTAAACCATCTTTCAGACATCAAATTATAAGTACCAATAGC 391 Query 78473 TGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCT 78532 || || || || ||| || || | | |||||||||||||||||| |||||||| Sbjct 390 GGAGTCAATATCTTCACCATGTATACCAATTGATACACGCATCAACATATGTTGAGGTCT 331 Query 78533 TTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 78580 |||| | | || ||| | ||| || | ||| ||| | ||||| || Sbjct 330 TTCAGCAATTTTTCCATTGAGTTTTAAAAGGTAAGATCTCTCCAATGT 283 >seq157723 Length=4480 Score = 122 bits (134), Expect = 1e-22 Identities = 188/265 (71%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 48330 GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 48389 |||||||| || |||||| | |||||||| | || || ||||| |||||| ||| Sbjct 3023 GCCCAATCTGCTTTCTTCCTAACACAAGGGAGATGCTCAATGGCATTGAAGAGAC-GTTC 3081 Query 48390 t--tttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAA 48447 | || || || || || | ||| |||||||| | ||||||||||| || || || | Sbjct 3082 TCGTTCCACTGGC-TCCTTGATGTATGTATCTATGAGTAGACTATACATCTCTGAATGGA 3140 Query 48448 TATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCG 48507 | ||||| ||||| || || || || ||||| || | ||||||| | ||||| || Sbjct 3141 TGTTTTCCATTGCTATTTGGAAACCATAAAAGCAACGAGCTTCTGGCACTTGTACTTCTT 3200 Query 48508 TACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTA 48567 | || | ||| |||| || ||||| || || |||||||| |||||||| || |||| Sbjct 3201 GTGAGAAACACTCAACCAAGTTTTCATTCACAATACCATCACTGGCAGCAAAGAAGGCTA 3260 Query 48568 ATACATGTTTAATAAAATATTTTTC 48592 | | ||| || |||| | |||| Sbjct 3261 AGATATGAGAGATGAAATGTCTTTC 3285 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 47972 TCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTT 48031 |||||| ||||| ||||| || || | |||||| ||||| ||||| || || || Sbjct 2501 TCTATCAGCAACAAATTCAATGTAAACTCTCATCAAATCACAGTTCATGCCAATGAGCCG 2560 Query 48032 AACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGA 48091 ||||| ||||| || || | || |||||||| || | |||||||| | || ||| Sbjct 2561 CACTGGAAGAGCGTCTGTTAAGAATTCTTGTTCAATCTTCACAGCATCATCAATGATCTT 2620 Query 48092 TGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATC 48151 |||| | || ||| |||| || | ||||||||| |||| || || |||||||| Sbjct 2621 CTTTACTTTCTCTTCAGATGGTTTATTCTTCAAATGTTTGTACATCAAGCAAGCAAAATC 2680 Query 48152 ACAATGAAGACC 48163 ||| || ||||| Sbjct 2681 ACAGTGGAGACC 2692 Score = 86.0 bits (94), Expect = 9e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896 |||||| || |||| ||||| ||||| ||||||||||| || ||||||||||| || Sbjct 2148 CATAACACCACTTTTCTGATAATCACCAACACGTTTCTCAAAGAAATTAGTTTTTCCCGT 2207 Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAA 47943 || || || |||||||||||||||||||| | || || |||| Sbjct 2208 CAGCGAGATCAACTCCATAAAATCAAATGGATTCTCAGCTTTGTAAA 2254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693183485221920