Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq63152 143 4e-29 seq157723 129 8e-25 seq94289 91.5 2e-13 seq160767 86.0 9e-12 >seq63152 Length=2952 Score = 143 bits (158), Expect = 4e-29 Identities = 241/348 (69%), Gaps = 8/348 (2%) Strand=Plus/Minus Query 76832 CCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCC 76891 |||| ||| || || ||| |||| || ||| | ||| ||| ||||| || || || Sbjct 626 CCAGCAATGTAGCTCCCAAATGCTCGTATACAATGAATGCTTAGCCCTATACCACCAGCA 567 Query 76892 ATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCC 76951 |||| |||||||||||||| | | | | || ||| | || | || || ||||| | Sbjct 566 CTTTTTGAGATTAGAGCACATCTTGTTAGAGTCTCAAATATATCATCAATGCTATCTCCT 507 Query 76952 ATCATGTTAAGAAGAAAACAGCTAGACATTTGA----TGATGAACAGTTCCTGCATTAAA 77007 ||||| | |||||||||||| || | |||| || || || || |||||||| Sbjct 506 GTCATGGCCAAAAGAAAACAGCTTGATAGTTGAGCTCTGTTG----GTACCAGCATTAAA 451 Query 77008 CAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAAC 77067 || ||| || |||||||| || |||||| ||||||| | | ||| || || ||||| | Sbjct 450 CAGTGTCGGTGATGCATGTGTAAACCATCTTTCAGACATCAAATTATAAGTACCAATAGC 391 Query 77068 TGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCG 77127 | || ||||| ||| || || | | ||||||||||||||||| ||||||| Sbjct 390 GGAGTCAATATCTTCACCATGTATACCAATTGATACACGCATCAACATATGTTGAGGTCT 331 Query 77128 TTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGT 77175 ||| || | || ||| | ||| || | ||| ||| | ||||| || Sbjct 330 TTCAGCAATTTTTCCATTGAGTTTTAAAAGGTAAGATCTCTCCAATGT 283 >seq157723 Length=4480 Score = 129 bits (142), Expect = 8e-25 Identities = 191/269 (71%), Gaps = 4/269 (1%) Strand=Plus/Plus Query 46818 AGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtt 46877 ||||||||| || || ||| | |||||||| | || || ||||| |||||| | Sbjct 3022 AGCCCAATCTGCTTTCTTCCTAACACAAGGGAGATGCTCAATGGCATTGAAGAGACGTTC 3081 Query 46878 tttttCATCACTATCT--TTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGA 46935 | ||| |||| || || | ||||||||||| | ||||||||||| |||||||| Sbjct 3082 TCGTTC--CACTGGCTCCTTGATGTATGTATCTATGAGTAGACTATACATCTCTGAATGG 3139 Query 46936 ATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 |||||||| || || || || || || ||||| || | ||||| | | ||||| ||| Sbjct 3140 ATGTTTTCCATTGCTATTTGGAAACCATAAAAGCAACGAGCTTCTGGCACTTGTACTTCT 3199 Query 46996 GTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCC 47055 | || | ||| ||| || |||||||| || |||||||| |||||||| || || Sbjct 3200 TGTGAGAAACACTCAACCAAGTTTTCATTCACAATACCATCACTGGCAGCAAAGAAGGCT 3259 Query 47056 AATACATGTTTAATAAAATATTTTTCATC 47084 || | ||| || |||| | ||||||| Sbjct 3260 AAGATATGAGAGATGAAATGTCTTTCATC 3288 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46461 TCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 46520 |||||| ||||| ||||| || || | |||||| ||||| ||||| || ||||| Sbjct 2501 TCTATCAGCAACAAATTCAATGTAAACTCTCATCAAATCACAGTTCATGCCAATGAGCCG 2560 Query 46521 GACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCGA 46580 || || ||||| || || | || ||||||||||| | |||||||| || ||| Sbjct 2561 CACTGGAAGAGCGTCTGTTAAGAATTCTTGTTCAATCTTCACAGCATCATCAATGATCTT 2620 Query 46581 TGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATC 46640 ||||| | || ||| |||| || | |||||||||| |||| || || |||||||| Sbjct 2621 CTTTACTTTCTCTTCAGATGGTTTATTCTTCAAATGTTTGTACATCAAGCAAGCAAAATC 2680 Query 46641 ACAATGAAGGCC 46652 ||| || || || Sbjct 2681 ACAGTGGAGACC 2692 >seq94289 Length=1197 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 77354 GTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGT 77413 ||||||||||||| |||||| || |||||||||||||| | |||||||| |||||| Sbjct 1188 GTTTCCTTGTGTAAATTCGAGGTTGCAATTCTAGCAGCTAGGGTGGCATAGTCGGGATGT 1129 Query 77414 TGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACT 77473 | || || || || || ||||||| ||||||||||| | ||| ||| || ||| Sbjct 1128 TTGGTTGTCATGGATGCAGCAGTTTCTGCAGCTAAAGTATCAAGCTCTGAAGTTGTTACT 1069 Query 77474 CCGTTATATAGCCCTTGAATAACTTTCATGGCTAT 77508 || ||| | || || |||||||| | ||| Sbjct 1068 CCACCATAGACACCAGAAACCACTTTCATTGTTAT 1034 >seq160767 Length=790 Score = 86.0 bits (94), Expect = 9e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 77354 GTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGT 77413 ||||||||||||| |||||| || |||||||||||||| | |||||||| || ||| Sbjct 781 GTTTCCTTGTGTAAATTCGAGGTTGCAATTCTAGCAGCTAGGGTGGCATAGTCGGGGTGT 722 Query 77414 TGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACT 77473 | || || || || || ||||||| ||||||||||| | ||| ||| || ||| Sbjct 721 TTGGTTGTCATGGATGCAGCAGTTTCTGCAGCTAAAGTATCAAGCTCTGAAGTTGTTACT 662 Query 77474 CCGTTATATAGCCCTTGAATAACTTTCATGGCTAT 77508 || ||| | || || |||||||| | ||| Sbjct 661 CCACCATAGACACCAGAAACCACTTTCATTGTTAT 627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711410030400960