Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Renilla_20reniformis_20[genbank_20GCA_5F900177555.1_202017-04-20] 171,053 sequences; 131,554,742 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq109567 141 2e-28 >seq109567 Length=8344 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || |||||||| | || || || || |||||||| ||||| ||| | || Sbjct 4655 CAAATCTTTGTGAAAACCTTAACTGGCAAGACTATCACCCTTGAGGTTGAACCCAGTGAT 4714 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || |||||||| ||||||||||| ||||| || ||||| ||| Sbjct 4715 ACTATCGAGAATGTAAAGACGAAGATTCAAGACAAAGAAGGCATCCCGCCAGACCAACAA 4774 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || ||||| ||||||||||| | ||| | || || ||| | Sbjct 4775 CGTCTCATCTTCGCTGGCAAACAACTCGAAGATGGCCGAACTTTGAGTGACTACAACATA 4834 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || ||||||||||| || || |||| || Sbjct 4835 CAGAAAGAATCAACCCTTCA-CTTGGTT 4861 Score = 140 bits (154), Expect = 8e-28 Identities = 159/211 (75%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || ||||| |||||||| || || || ||||| || ||||| || |||||| ||| Sbjct 5567 CAGATTTTTGTGAAAACCCTGACTGGCAAAACAATAACCCTAGAAGTGGAAGCAAGC--- 5623 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||| ||||| || ||| || ||||| ||||||||||| ||||| || ||||| Sbjct 5624 GACACCATTGAGAATGTGAAAACCAAAATTCAAGACAAAGAAGGGATCCCACCAGACCAA 5683 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 ||||| || ||||| || || || || || |||||||| | || || | ||||| ||| Sbjct 5684 CAACGTCTCATCTTTGCAGGCAAGCAACTGGAAGATGGCCGAACCCTGTCTGATTACAAC 5743 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 | || |||||||| || || || |||| || Sbjct 5744 ATTCAGAAAGAATCCACTCTTCA-CTTGGTT 5773 Score = 131 bits (144), Expect = 4e-25 Identities = 158/211 (75%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || ||||| |||||||| | || || ||||| || ||||| ||||| || |||| Sbjct 5339 CAGATTTTTGTGAAAACCTTGACTGGTAAAACTATTACCCTTGAGGTTGAGGCAAGC--- 5395 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| || ||||| || || ||||||||| ||||||||||||||||| || || || Sbjct 5396 GACACAATTGAGAATGTGAAGACAAAGATTCAAGACAAAGAAGGAATCCCACCAGATCAA 5455 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAA 178099 ||||| || ||||| || || || || || |||||||| | || |||| | || || || Sbjct 5456 CAACGTCTCATCTTTGCAGGCAAGCAACTGGAAGATGGTCGAAC-CTTGTCTGACTACAA 5514 Query 178100 CGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||| || |||||||| || ||| | ||| Sbjct 5515 TATCCAGAAGGAATCAACCCTTCATTTGGTT 5545 Score = 125 bits (138), Expect = 2e-23 Identities = 159/212 (75%), Gaps = 10/212 (5%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || |||||||||||||| | || || || |||||||| || || || || |||| Sbjct 4883 CAGATTTTCGTGAAAACCTTGACTGGCAAGACGATCACTCTAGAAGTTGAGCCAAGC--- 4939 Query 177981 GACACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCA 178039 ||||| || || || || || || ||| ||||| ||||||||||| ||||| || || || Sbjct 4940 GACACGATTGAAAATGTAAAGACGAAA-ATTCAAGACAAAGAAGGCATCCCGCCAGATCA 4998 Query 178040 GCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATA 178098 ||||| || || ||||| || ||||| || |||||||| | || |||| | || || | Sbjct 4999 ACAACGTCTCATTTTCGCTGGCAAACAACTGGAAGATGGCCGAAC-CTTGTCTGACTACA 5057 Query 178099 ACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 | |||| ||||||||||| || ||| | ||| Sbjct 5058 ATATCCAGAAAGAATCAACCCTTCATTTGGTT 5089 Score = 122 bits (134), Expect = 2e-22 Identities = 158/212 (75%), Gaps = 10/212 (5%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || |||||||||||||| | || || || |||||||| || || || || |||| Sbjct 5111 CAGATTTTCGTGAAAACCTTGACTGGCAAGACGATCACTCTAGAAGTTGAGCCAAGC--- 5167 Query 177981 GACACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCA 178039 ||||| || || ||||| || || ||| ||||| || |||||||| ||||| || ||||| Sbjct 5168 GACACGATTGAAAACGTGAAGACGAAA-ATTCAAGATAAAGAAGGCATCCCGCCAGACCA 5226 Query 178040 GCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATA 178098 || || || || ||||| || ||||| || |||||||| | || |||| | || || | Sbjct 5227 ACAGCGTCTCATTTTCGCTGGCAAACAACTGGAAGATGGTCGAAC-CTTGTCTGACTACA 5285 Query 178099 ACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 | |||| |||||||| || || ||| | ||| Sbjct 5286 ATATCCAGAAAGAATCGACCCTTCATTTGGTT 5317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1201093082765282