Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= AC_000017.1 Length=36001 Score E Sequences producing significant alignments: (Bits) Value seq7310 1180 0.0 >seq7310 Length=770 Score = 1180 bits (1308), Expect = 0.0 Identities = 691/713 (97%), Gaps = 2/713 (0%) Strand=Plus/Plus Query 11526 GGTAACCGCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAA 11585 ||||||||||||||| || ||||||||||||||||||||||||| ||| |||||| ||| Sbjct 59 GGTAACCGCGTACGAACACACGGTGAACCAGGAGATTAACTTTCTGAAA-GCTTTACCAA 117 Query 11586 CCACGTGCGCACGCTTGTAGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGA 11645 |||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||| Sbjct 118 CCACGTGCGCACGCTTGTGGCACGCGAGGAGGTGGCTATACGACTGATGCATCTGTGGGA 177 Query 11646 CTTTGTAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGTTGTTTCT 11705 |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 178 CTTTGTAATCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCT 237 Query 11706 TATAGTGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGTTAAACATAGTAGA 11765 |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 238 TATAGTGCAGCACACCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGA 297 Query 11766 GCCCGAGGGCCGCTGGCTGCTCGATTTGATAAATATTCTGCAGAGCATAGTGGTGCAGGA 11825 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 298 GCCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGA 357 Query 11826 GCGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGG 11885 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 GCGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGG 417 Query 11886 CAAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAA 11945 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 CAAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAA 477 Query 11946 GATCGAGGGGTTCTACATGCGCATGGCGCTGAAGGTGCTTACCTTGAGCGACGACCTGGG 12005 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 478 GATCGAGGGGTTCTACATGCGCATGGCGTTGAAGGTGCTTACCTTGAGCGACGACCTGAG 537 Query 12006 CGTTTATCGCAACGAGCGCATCCAC-AAGGCCGTGAGCGTGAGCCGGCGGCGCGAGCTCA 12064 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 538 CGTTTATCGCAACGAGCGCATCCACAAAGGCCGTGAGCGTGAGCCGGCGGCGCGAGCTCA 597 Query 12065 GCGACCGCGAGCTGATGCACAGCCTGCAAAGGGCCCTGGCTGGCACGGGCAGCGGCGATA 12124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 GCGACCGCGAGCTGATGCACAGCCTGCAAAGGGCCCTGGCTGGCACGGGCAGCGGCGATA 657 Query 12125 GAGAGGCCGAGTCCTACTTTGACGCGGGCGCTGACCTGCGCTGGGCCCCAAGCCGACGCG 12184 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 658 GAGAGGCCGAGTCCTACTTTGACGCGGGCGCTGACCTGCGCTGGGCCCCAAGCCTACGCG 717 Query 12185 CCCTGGAGGCAGCTGGGGCCGGACCTGGGCTGGCGGTGGCACCCGCGCGCGCT 12237 ||||| | |||||||||||||||||||||||||||||||||| |||||||||| Sbjct 718 CCCTGTAAGCAGCTGGGGCCGGACCTGGGCTGGCGGTGGCACTCGCGCGCGCT 770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 115007639932720