Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= AC_000019.1 Length=34794 Score E Sequences producing significant alignments: (Bits) Value seq7310 315 2e-81 >seq7310 Length=770 Score = 315 bits (348), Expect = 2e-81 Identities = 423/584 (72%), Gaps = 6/584 (1%) Strand=Plus/Plus Query 11079 GTATCGGCTTACGAGCAGACAGTAAAGGAAGAGCGTAACTTCCAAAAGTCTTTTAATAAT 11138 ||| | || ||||| || || || || | ||| |||||| | || |||| | || Sbjct 60 GTAACCGCGTACGAACACACGGTGAACCAGGAGATTAACTTTCTGAAAGCTTT-ACCAAC 118 Query 11139 CATGTGCGAACCCTGATTGCCCGCGAAGAAGTTACCCTTGGTTTGATGCATTTGTGGGAT 11198 || ||||| || || | || ||||| || || | | | |||||||| ||||||| Sbjct 119 CACGTGCGCACGCTTGTGGCACGCGAGGAGGTGGCTATACGACTGATGCATCTGTGGGAC 178 Query 11199 TTGATGGAA--GCTATCATTCAGAACCCTACTAGCAAACCTCTGACCGCCCAGCTGTTTC 11256 || || || || | || ||||| | |||||| || || | || |||||||| | Sbjct 179 TT--TGTAATCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCC 236 Query 11257 TGGTGGTGCAACACAGCAGAGACAATGAGGCTTTCAGAGAGGCGCTGCTGAACATCACCG 11316 | | ||||| |||| ||| ||||| ||||| ||||| || |||||||| ||||| | Sbjct 237 TTATAGTGCAGCACACCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAG 296 Query 11317 AACCCGAGGGGAGATGGTTGTATGATCTTATCAACATTCTACAGAGTATCATAGTGCAGG 11376 | |||||||| | ||| || ||| | || |||||||| ||||| || | ||||||| Sbjct 297 AGCCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGG 356 Query 11377 AGCGGAGCCTGGGCCTGGCCGAGAAGGTAGCTGCCATCAATTACTCGGTTTTGAGCTTGG 11436 |||| ||| || ||||||| || ||||| || ||||| || || || | | || ||| Sbjct 357 AGCGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGG 416 Query 11437 GAAAATATTACGCTCGCAAAATCTACAAGACTCCATACGTTCCCATAGACAAGGAGGTGA 11496 | || | |||||| ||||| || ||| | || || ||||||||||||||||||||||| | Sbjct 417 GCAAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAA 476 Query 11497 AGATAGATGGGTTCTACATGCGCATGACGCTCAAGGTCTTGACCCTGAGCGATGATCTTG 11556 |||| || |||||||||||||||||| || | ||||| | ||| ||||||| || || Sbjct 477 AGATCGAGGGGTTCTACATGCGCATGGCGTTGAAGGTGCTTACCTTGAGCGACGACCTGA 536 Query 11557 GGGTGTATCGCAATGACAGAATGCA-TCGCGCGGTTAGCGCCAGCAGGAGGCGCGAGTTA 11615 | || |||||||| || | || || || || |||| ||| || |||||||| | Sbjct 537 GCGTTTATCGCAACGAGCGCATCCACAAAGGCCGTGAGCGTGAGCCGGCGGCGCGAGCTC 596 Query 11616 AGCGACAGGGAACTGATGCACAGTTTGCAAAGAGCTCTGACTGG 11659 |||||| | || ||||||||||| ||||||| || ||| |||| Sbjct 597 AGCGACCGCGAGCTGATGCACAGCCTGCAAAGGGCCCTGGCTGG 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111147722200640