Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3179 163 3e-35 >seq3179 Length=6207 Score = 163 bits (180), Expect = 3e-35 Identities = 574/883 (65%), Gaps = 20/883 (2%) Strand=Plus/Plus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 |||||| | | || || || | ||| | | |||||||||| ||||||| || || | Sbjct 3077 ACACCCGCTTTCTGATATTCACCAACTCTTCTTTCGAAAAAAATAGTTTTTCCTTCGATT 3136 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAAA-ATATTTTAGAGTACCCCAG 16782 || || | |||||||||| || ||||| || ||| |||| ||| | | | || Sbjct 3137 GAGATCATATCCATGAAATGGAACGGATT-GTGACTGTTGTATATCTTATCGCAGTCAAG 3195 Query 16783 TTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCAT 16842 ||| | | |||||| || | ||||| |||||||| |||| | || ||| || Sbjct 3196 TTCCAGCAACAGTCTATCGGCAATGAATTCAATATATTGCGACATCAGTTTTGCGTTAAT 3255 Query 16843 TCCTAT-AAGAC-GTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCT 16900 ||| || ||| | || ||| | |||||| |||||||| || || || || ||| Sbjct 3256 TCCAATCAAGTCCGT--CGGTAAAGCTTCTGTCAAAAACTCTTTTTCAATCCGGACTGCT 3313 Query 16901 TCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATC 16960 || | |||||| | | | ||| | |||| | | || | ||| |||||| Sbjct 3314 TCATCAATAATTTGACAATGTTTTTCTTTACACGGCTTGTTAACAATTTTTTTCAACATC 3373 Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 | |||||| |||||||||||||| || || || || |||||||| || ||||| ||| Sbjct 3374 AAACATGCAAAATCGCAATGTAAACCTTCATCCCTAGAAATAAGTTCATTTGAAAAAGTC 3433 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 || ||| | | | ||| | | ||| ||||||||| ||| | || || || ||||| Sbjct 3434 AAACCGTGTAAAATACCTTTTGTTCTTAGCCAAAATATAGCGCCAAATGAACCCGAAAAA 3493 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 |||||||| || |||| || || || | | || || |||| || ||||| | Sbjct 3494 AATATACCTTCAACGGCCGCGAAAGCTACAATACGCTCACCGTAGGTGGCGTC----CGA 3549 Query 17141 CGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC--CATCGTTTCTATG 17197 ||| ||||| || |||| ||| ||||| | || || | ||||| || Sbjct 3550 CGAGATCCAATTTAAAGCCCATGTGGCCTTTTG--TCCGACAGTCGGAAATGTTTCAATT 3607 Query 17198 GCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTG 17257 || || |||| | |||||| | || || ||||| || || | ||||| Sbjct 3608 GCGTTGAATAGTCGACGTTTTTCAATGGGATCACGAATGTACGTTTCAATTAACAGGCTA 3667 Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCC 17317 |||||||| ||||| | ||| ||||| ||| | ||||| ||| || || |||||| Sbjct 3668 TACATTTCCGAGTGCACGTTTTCCATCGCTTTTTGAAACGAGTAGAAAAATATAGCTTCC 3727 Query 17318 GCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTC 17377 | || || | | || | |||| | ||| ||||| || || || || || Sbjct 3728 GGTACCTGGA-TATCAAGCAGAAAAG--AGTCTAAATTTTTAGCAACAATTCCATCACTA 3784 Query 17378 GCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGC 17437 | ||| ||||| ||||||||||| ||| |||| |||| | | ||| | Sbjct 3785 GTGGCAAAAAATGCCAATATATGTGAAATAAAATGCCTTTCACTATCTTTGAGATTTGTC 3844 Query 17438 CAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGC- 17496 ||||| | |||||||| |||| ||| ||||| || |||| | | | ||| Sbjct 3845 CAGTCGATGAAATCTTTAGATAGATCAACTTCCTCCACACTCCACGATGAGACAAGTGCT 3904 Query 17497 -CTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||||||||||| |||| ||||||| |||| ||| || || Sbjct 3905 TTTTTTTATACATGATCCATATATCATGATATTTTATTGGAAA 3947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517195480401600