Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_001460.1 Length=34125 Score E Sequences producing significant alignments: (Bits) Value seq7310 394 2e-105 >seq7310 Length=770 Score = 394 bits (436), Expect = 2e-105 Identities = 496/675 (73%), Gaps = 11/675 (2%) Strand=Plus/Plus Query 10827 GTAACAGCATATGAACAAACGGTTACAGAGGAACGTAACTTTCAAAAAAGCTTTAATAAC 10886 ||||| || || ||||| ||||| | |||| |||||||| ||| |||||| ||| Sbjct 60 GTAACCGCGTACGAACACACGGTGAACCAGGAGATTAACTTTCTGAAA-GCTTTACCAAC 118 Query 10887 CATGTGCGCACACTAATAGCGCGAGAAGAAGTAGCCATTGGTTTAATGCATCTTTGGGAC 10946 || |||||||| || | || || || || || || || | | |||||||| |||||| Sbjct 119 CACGTGCGCACGCTTGTGGCACGCGAGGAGGTGGCTATACGACTGATGCATCTGTGGGAC 178 Query 10947 TTTGTAGAAGCTTATGTACATAATCCAGCAAGTAAACCCCTAACTGCCCAGCTGTTCTTA 11006 |||||| || | || || ||| || || || || | || ||||||||| | Sbjct 179 TTTGTAATCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCTT 238 Query 11007 ATAGTTCAACATAGTAGAGACAATGAAACTTTTAGGGATGCAATGCTTAACATAGCTGAA 11066 ||||| || || | || ||||| || | || |||||||| |||| ||||||| || Sbjct 239 ATAGTGCAGCACACCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGAG 298 Query 11067 CCCCAGGGTCGGTGGTTACTCGATTTAATTAACATTCTGCAGAGCATTGTGGTTCAGGAA 11126 ||| |||| || ||| | |||||||| || ||||||||||||||||| ||||| ||||| Sbjct 299 CCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGAG 358 Query 11127 CGCAGTCTTAGTTTGGCAGACAAGGTGGCCGCCATTAATTACTCCATGTTAAGTTTGGGA 11186 ||||| | || |||| |||||||||||||||||||| || |||||| | ||| |||| Sbjct 359 CGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGGC 418 Query 11187 AAGTTTTATGCTCGTAAAATCTACAAAAGTCCGTATGTTCCCATTGACAAGGAAGTGAAG 11246 |||||||| || || || || ||| | | || || |||||||| |||||||| || ||| Sbjct 419 AAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAAG 478 Query 11247 ATAGACAGCTTTTATATGCGCATGGCTTTAAAGGTACTAACATTAAGCGACGATCTTGGA 11306 || || | || || ||||||||||| || ||||| || || || |||||||| || | Sbjct 479 ATCGAGGGGTTCTACATGCGCATGGCGTTGAAGGTGCTTACCTTGAGCGACGACCTGAGC 538 Query 11307 GTGTACCGCAATGACCGAATCCACAAA-GCAGTAAGCGCCAGTCGCCGCAGAGAGCTAAG 11365 || || ||||| || || ||||||||| || || |||| || || || | ||||| || Sbjct 539 GTTTATCGCAACGAGCGCATCCACAAAGGCCGTGAGCGTGAGCCGGCGGCGCGAGCTCAG 598 Query 11366 CGACAAAGAGCTTATGCATAGCTTACAAAGGGCGCTG------ACGGG-AGCAG-GA-AC 11416 |||| ||||| ||||| ||| | |||||||| ||| ||||| ||| | || | Sbjct 599 CGACCGCGAGCTGATGCACAGCCTGCAAAGGGCCCTGGCTGGCACGGGCAGCGGCGATAG 658 Query 11417 AGAGGACGAGTCGTTCTTTGATATGGGCGCAGACCTACGGTGGCAGCCAAGCGCTCGCGC 11476 ||||| |||||| | |||||| |||||| ||||| || ||| |||||| ||||| Sbjct 659 AGAGGCCGAGTCCTACTTTGACGCGGGCGCTGACCTGCGCTGGGCCCCAAGCCTACGCGC 718 Query 11477 TTTGGAGGCAGCTGG 11491 || | |||||||| Sbjct 719 CCTGTAAGCAGCTGG 733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109008298039280