Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3179 280 2e-70 seq51498 143 3e-29 seq43701 102 1e-16 seq1 102 1e-16 seq12393 100 3e-16 >seq3179 Length=6207 Score = 280 bits (310), Expect = 2e-70 Identities = 618/914 (68%), Gaps = 17/914 (2%) Strand=Plus/Plus Query 23810 AAAATGATTGTCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTC 23869 |||||||| ||| || | ||||| || ||| ||| || |||||||| || | | |||| Sbjct 3052 AAAATGATGGTCATCCGGTGACATCACACCCGCTTTCTGATATTCACCAACTCTTCTTTC 3111 Query 23870 GAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAAC 23929 ||||||| ||||||| ||||| | ||| || | |||||||||| | | |||||| | Sbjct 3112 GAAAAAAATAGTTTTTCCTTCGATTGAGATCATATCCATGAAATGGAACGGATTGTGACT 3171 Query 23930 ATTATAGATTCTTTTAAATCCCAATTC-AGAAATCAATCTATCTGCGACAAACTCCATAT 23988 || || || | | | | | ||| || || || |||||| || | || || |||| Sbjct 3172 GTTGTATATCTTATCGCAGTCAAGTTCCAGCAA-CAGTCTATCGGCAATGAATTCAATAT 3230 Query 23989 ATGTTTTCATCATTTCACAATTCATTCCTAT-AAGTTTAACTGGAAGAGCCACAGTAAGA 24047 || ||||| || || ||||| || |||| | | || ||| | || | | Sbjct 3231 ATTGCGACATCAGTTTTGCGTTAATTCCAATCAAGTCCGTCGGTAA-AGCTTCTGTCAAA 3289 Query 24048 AATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG- 24106 || |||| |||||| ||| || || ||||| | | |||||| || ||| Sbjct 3290 AACTCTTTTTCAATCCGGACTGCTTCATCAATAATTTGACAATGTTTTTCTTTACACGGC 3349 Query 24107 -TGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTC 24165 || ||||| | ||| |||||||||||||| |||||||| |||| ||| || || | Sbjct 3350 TTGTTAACAATT--TTTTTCAACATCAAACATGCAAAATCGCAATGTAAACCTTCATCCC 3407 Query 24166 TACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAA 24225 || ||| | ||| || ||||| || | ||| | | | || || | ||||||| Sbjct 3408 TAGAAATAAGTTCATTTGAAAAAGTCAAACCGTGTAAAATACCTTTTGTTCTTAGCCAAA 3467 Query 24226 ATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTC 24285 |||| | ||||||| || ||||| || || ||||| || ||||| || || | || | Sbjct 3468 ATATAGCGCCAAATGAACCCGAAAAAAATATACCTTCAACGGCCGCGAAAGCTACAATAC 3527 Query 24286 TTTCTCCATAACCGGCG-CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 24344 || || || |||| | | | | ||||| ||| |||||| |||||| | | Sbjct 3528 GCTCACCGTAGGTGGCGTCCGACGAG-ATCCAATTTAAAGCCCATGTGGCCTTTTGTCCG 3586 Query 24345 ACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA 24404 ||| || | ||| || || || || || || ||||||| | ||| || Sbjct 3587 ACAGTCGGAAATGTTTCAATTGCGTTGAATAGTCGACGTTTTTCAATGGGATCACGAATG 3646 Query 24405 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 24464 || || ||||| || || |||||||||||||| || | |||||| || || ||||||| Sbjct 3647 TACGTTTCAATTAACAGGCTATACATTTCCGAGTGCACGTTTTCCATCGCTTTTTGAAAC 3706 Query 24465 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTAT-ACAAAATCGTTCTGCTAAATT 24523 ||||||| || |||| || | | ||| | || | | |||| || ||||||| Sbjct 3707 GAGTAGAAAAATATAGCTTCCGGTACCTGGATATCAAGCAGAAAAGAGT----CTAAATT 3762 Query 24524 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 24583 || | || ||||| ||||| | |||||||| ||||||| |||| ||||||| | Sbjct 3763 TTTAGCAACAATTCCATCACTAGTGGCAAAAAATGCCAATATATGTGAAATAAAATGCCT 3822 Query 24584 TTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCAC 24643 ||| | | || || |||| || ||| ||||||||||| ||| ||||| ||||| Sbjct 3823 TTCACTATCTTTGAGATTTGTCCAGTCGATGAAATCTTTAGATAGATCAACTTCCTCCAC 3882 Query 24644 TGTCCAAAATGATGCCTCTGC--CTTTTTATACATATTCCAGATGTCATGATATTGAATT 24701 |||| |||| | ||| ||||||||||| |||| || |||||||||| ||| Sbjct 3883 ACTCCACGATGAGACAAGTGCTTTTTTTTATACATGATCCATATATCATGATATTTTATT 3942 Query 24702 GGAAAAATAACAAA 24715 |||||||| ||||| Sbjct 3943 GGAAAAATTACAAA 3956 >seq51498 Length=41259 Score = 143 bits (158), Expect = 3e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 |||||| || | |||||| |||| | | ||||||||||||| ||||||||||| | Sbjct 9118 TTCAAATTCTTTTCCCCAGACATCATGAAGACCAGGACATTCATTTGGACACATCAATGT 9059 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| ||| || || || |||||||| || |||||||||||||| ||||| ||| Sbjct 9058 CCAATCTTGGTTGGTCTCAACACGTTTCATGAACAGATCAGGAATCCACAGAGCATAAAA 8999 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 |||||||| | ||| ||||| || |||||||| || || ||| ||| | ||| | | Sbjct 8998 AAGATCTCTTGCTCTTTGTTCTTCCTTTCCTGTGTTTTTCTTAGCATCCAAGAAATCAAA 8939 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGG 54161 || || | |||||| ||||||||||| |||| Sbjct 8938 GATGTCTGCATGCCATGGTTCCAAGTAAATGG 8907 Score = 109 bits (120), Expect = 7e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 53759 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 53818 |||||||| ||||||||||| || || || ||||||||||| || || || || || Sbjct 10079 ATCTCAGTACAAAGATTACTGCATTTTATTGTTCCTAAATTCTGATGGTTGGATTTCCTG 10020 Query 53819 TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATC 53878 ||||| ||||| ||||| || ||| |||| |||||||||||| |||| | ||| ||||| Sbjct 10019 TTACAAGCATCTTTATACAGCATGTATGGTGTACCAGTTTCAGTCTGTGCTTCAATAATT 9960 Query 53879 GCTTTCCA 53886 || | ||| Sbjct 9959 GCATACCA 9952 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 ||||| | | || |||||||| || ||||| ||| | || ||||| ||||| || | Sbjct 13563 TCCATGCAAAGAAGTGCATACTGGTCAGTTTTCCATAGTTTGGCTCTGCAATATGAATGT 13504 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| || ||||||||||| ||||| ||||| || ||||||||||| | | || ||| Sbjct 13503 TCAATGACTGACTTTGATCAATGAATGCTCCTCTATCTGCAGCCATGATCAAAATATTCT 13444 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | |||| | || | | ||| |||| ||||||| Sbjct 13443 TCTGAGAGATTTCCCACACAGTTCTGTACAGTTTCTTGATATGATCTGGAA 13393 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| || || | | || ||||| | ||||| || || || Sbjct 12509 ACCTGAAATTCTCCTGACAAGACCCTTCTTGAATAGATATTGGTTGTATAAGGCTCAACT 12450 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 || ||||| || |||| || || |||||||| || || ||||||||||| | |||||| Sbjct 12449 GATTCATTGTTACCCAGTATCTGTGCAGTTGAAGCTGTTGGCATAGGTGCTAATAATAAA 12390 Query 53270 CTATT 53274 ||||| Sbjct 12389 CTATT 12385 >seq43701 Length=19211 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 ||||| | | || |||||||| || ||||| ||| | || ||||| ||||| || | Sbjct 6107 TCCATGCAAAGAAGTGCATACTGGTCAGTTTTCCATAGTTTGGCTCTGCAATATGAATGT 6166 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| || ||||||||||| ||||| ||||| || ||||||||||| | | || ||| Sbjct 6167 TCAATGACTGACTTTGATCAATGAATGCTCCTCTATCTGCAGCCATGATCAAAATATTCT 6226 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | |||| | || | | ||| |||| ||||||| Sbjct 6227 TCTGAGAGATTTCCCACACAGTTCTGTACAGTTTCTTGATATGATCTGGAA 6277 >seq1 Length=778493 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 24404 ATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAA 24463 ||||||||||||||||||||| ||||| || |||||||||||||| || || ||||| || Sbjct 566570 ATATGTATCAATCAAAAGACTGTACATCTCTGAATGAATGTTTTCTATTGCTATTTGGAA 566511 Query 24464 TCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 || || ||||| | || || |||| |||| |||| || |||||| || Sbjct 566510 CCCATAAAAACAACGCGCTTCTGTAACTTGTATTTCTTGACTAAATCGCTC 566460 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 23829 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 23888 ||||| |||||||| || || ||||| || ||||||||||| ||||| || || || ||| Sbjct 568330 GACATTACTCCCATCTTCTGATATTCTCCAACACGTTTTTCAAAAAAGTTTGTCTTTCCT 568271 Query 23889 TCTAATGATATATTTTCCATGAAATCGGATGGATT 23923 || | ||| || ||||||||||| || | ||||| Sbjct 568270 TCAAGTGAAATGTTTTCCATGAAGTCAAAGGGATT 568236 >seq12393 Length=14882 Score = 100 bits (110), Expect = 3e-16 Identities = 98/125 (78%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 53759 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 53818 |||||||| ||||| ||||| || || || ||||||||||| || || || ||| || Sbjct 894 ATCTCAGTACAAAGGTTACTGCATTTTATTGTTCCTAAATTCTGATGGTTGGATTTTCTG 953 Query 53819 TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAAT- 53877 ||||| ||||| ||||| || ||| |||| ||||||||||| |||| | ||| || || Sbjct 954 TTACAAGCATCTTTATACAGCATGTATGGTGTACCAGTTTCTGTCTGTGCTTCAATGATA 1013 Query 53878 CGCTT 53882 ||||| Sbjct 1014 CGCTT 1018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593319947337600