Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq40525 435 9e-118 seq7768 185 3e-42 seq41186 95.1 4e-15 >seq40525 Length=778 Score = 435 bits (482), Expect = 9e-118 Identities = 578/799 (72%), Gaps = 38/799 (5%) Strand=Plus/Plus Query 7044 CTTCCACCTGTGGCCCATTCGGGCCACCTTTCTGGAGTATTACCCATGACAGAGAAAGAA 7103 ||||| || ||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 CTTCCCCCAGTGGCCCTGTCGGGCCACCTTTCTGGAGTATTTCCCATGACAGAGAAAGAA 60 Query 7104 AAGCTGATTGCTCGGCTGAATGAACTTGGTACCCAGCTTAACCGCGAAGTCAGCACCAGC 7163 |||||||| ||||| |||||||| ||||| || |||||||||||||| |||||||||||| Sbjct 61 AAGCTGATCGCTCGCCTGAATGACCTTGGCACTCAGCTTAACCGCGAGGTCAGCACCAGC 120 Query 7164 GGCACCATTCAGGAACTCACTATGCGTATTGCTGAGCTTGAAGAGGAGCTGGATGGAGAC 7223 ||||| ||||||||||| || ||||||||||||||||| ||||||||||||||||| || Sbjct 121 GGCACGATTCAGGAACTTACGATGCGTATTGCTGAGCTGGAAGAGGAGCTGGATGGTGAT 180 Query 7224 GCCACCTCGGTTGACGGCGAAAGCGGCGGGCAGAATGCTGCCGACAGCANNNNNNNNNNN 7283 |||| ||| ||||||| |||| ||| | | |||||||| ||||||||| Sbjct 181 GCCAGTTCGATTGACGGTGAAAACGGAGAGAAGAATGCTCCCGACAGCA----------- 229 Query 7284 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATGTTGCTGATGTGG-AAAAAGTAAA 7342 ||||| | || || |||||||||| Sbjct 230 -------CCGACAGCACCGACAGCACCGACAGCGATGTAGATGGCACGGAAAAAAGTAAA 282 Query 7343 ATCGGAAGCGGGTACAAATGGTGACCAGGTATCAGTAGAAACGCTGGCTACCCTGCATGT 7402 | | ||||||| |||| | ||||| |||||||||||||||||||| ||| |||| | Sbjct 283 AACCGAAGCGGTCACAACGGATGACCGGGTATCAGTAGAAACGCTGGTGACCTTGCACAT 342 Query 7403 TGAGGCACTACATGCCACGCGTAACGAACCGGTATCCATCGTTGAGCCCGGTGTGATTAT 7462 | || || || |||||||||||||| | || || || || ||||| ||||| |||| Sbjct 343 AAACGCGCTTCACGCCACGCGTAACGAGTCTGTGTCTATTGTCGAGCCTGGTGTCGTTAT 402 Query 7463 CCGCGTATCCGAACAGGATGCAGACGAGCTGATCTCAAAGGG-GCTGG---CTCGCGAAG 7518 |||||| | || || || |||| ||||| || ||| ||||| | | ||| Sbjct 403 CCGCGTGACTGACGTAGAGGCTAACGACCTGATATCTCGGGGCGCTGGGCCCCGGGGAAA 462 Query 7519 TCTG--AAGGGGGCCGCATGGCTGA-TTTCGATAATC-TCTTTGACGAGGCCAT-GTCGC 7573 |||| | ||||||| |||||||| |||||| |||| | ||||| || | || | ||| Sbjct 463 TCTGACAGGGGGGCCTAATGGCTGATTTTCGACAATCTTTTTTGATGAATCGATGGGCGC 522 Query 7574 GAGCAGAT-GGTGCTATCCGT-GGTGTGATGGGTACAG-AGGCAAAGGTGATGTCAGGCA 7630 | || ||| |||| ||| || ||||||| ||| |||||| | | | ||| | Sbjct 523 GCGCGGATACCCACTATACGTGGGATTGATGGGCGCAGAAGGCAAGGATAACCTCATGAT 582 Query 7631 CTTTGTCAGGTGCAAC---CCTGGTCGGTGTATTTGATGATCCAGAAAACATCGGTTATG 7687 |||| || || | || || || || || ||||| |||||||| ||||| ||||| Sbjct 583 CTTTATCCGGCGTCACGCTCCCGG--GGGGTCTTTGACGATCCAGAGAACATTGGTTACA 640 Query 7688 CCGGCGCCGGGATTCGCGTTGAAGGTACCAGCCCGACGCTGTTTGTTAAAACCTCCACAG 7747 ||| | ||||| || |||| || ||||| |||||| ||||||| || || || | Sbjct 641 CCGAAGTGGGGATCCGAATTGATGGAACCAGGCCGACGTTGTTTGTGAACACATCGGATG 700 Query 7748 TCAGCCAGCTGCAGCGTATGGACACACTGACGATTAACGGGCGGCAATTCTGGGTTGATC 7807 | | | |||| | | |||| || |||| | ||||| |||| |||| |||||||||| Sbjct 701 TTACCGGGCTGGAAAGGCTGGATACGCTGAAGGTTAAC-GGCGTGAATTTTGGGTTGATC 759 Query 7808 GTGTTGGTCCTGATGATTG 7826 | |||||||| |||||||| Sbjct 760 GCGTTGGTCC-GATGATTG 777 >seq7768 Length=548 Score = 185 bits (204), Expect = 3e-42 Identities = 189/243 (78%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 7008 GACCCGGACGAGTTCGTGTCCGTCAAGCTGGCATAACTTCCACCTGTGGCCCATTCGGGC 7067 ||||| |||| || | ||| ||| |||||||| ||||| |||||||||| |||| | Sbjct 304 GACCCTGACGCAGTCATCTCCTTCATACTGGCATAGCTTCCCCCTGTGGCCCTGTCGGTC 363 Query 7068 CACCTTTCTGGAGTATTACCCATGACAGAGAAAGAAAAGCTGATTGCTCGGCTGAATGAA 7127 ||||||||||||| ||||||||||| | | ||||| ||||||| |||| ||||||| Sbjct 364 CACCTTTCTGGAG-ATTACCCATGAGACACAAAGATTAGCTGATCTCTCGCATGAATGAC 422 Query 7128 CTTGGTACCCAGCTTAACCGCGAAGTCAGCACCAGCGGCACCATTCAGGAACTCACTATG 7187 | ||| || | ||||| | | | | || ||||| || ||| ||||| ||||| || ||| Sbjct 423 CGTGGCACTCGGCTTATCAACAAGGACATCACCAACGTCACGATTCAAGAACTTACGATG 482 Query 7188 CGTATTGCTGAGCTTGAAGAGGAGCTGGATGGAGACGCCACCTCGGTTGAC-GGCGAAAG 7246 ||||| || ||||| |||||||| |||||||| || |||| ||| ||||| || |||| Sbjct 483 CGTATAGCCGAGCTGGAAGAGGACCTGGATGG-GATGCCAGTTCGATTGACGGGTGAAAA 541 Query 7247 CGG 7249 ||| Sbjct 542 CGG 544 >seq41186 Length=295252 Score = 95.1 bits (104), Expect = 4e-15 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 7077 GGAGTATTACCCATGACAGAGAAAGAAAAGCTGATTGCTCGGCTGAATGAACTTGGTACC 7136 |||||||| ||||||||||| |||||||||||||| |||| |||||||| ||||| || Sbjct 92030 GGAGTATTTCCCATGACAGAAAAAGAAAAGCTGATCGCTC-CCTGAATGACCTTGGCACT 91972 Query 7137 CAGCTTAACCGCGA 7150 |||||||||||||| Sbjct 91971 CAGCTTAACCGCGA 91958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148183105179280