Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 113 5e-20 seq3179 104 2e-17 >seq1 Length=778493 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || |||||||| || || || || || || || || ||||| || ||| | |||| ||| Sbjct 565007 GAACCGCTGCTTCGTGACAATCCTCGTCGTTTTGTAATTTTTCCAATAAAGTACCACGAC 565066 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| || || || || ||||||||||| | ||||| |||||||| Sbjct 565067 ATCTGGCAGATGTACAAGAAAGCAGAAGCTTCGTTCTGGACTGCTGAGGAAGTGGACCTT 565126 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCAC 116755 || || ||| | | |||| || | || ||| | ||| | ||||| || ||| Sbjct 565127 TCAAAAGACTTGGCTCATTGGGCCAGCCTCAAGGACGATGAGAGGCATTTTATTTCGCAT 565186 Query 116756 GTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 || | || || || || ||||| || || || ||||| || ||| |||| Sbjct 565187 GTTTTAGCATTCTTTGCTGCCAGTGATGGGATTGTCAATGAAAATTTGGT 565236 >seq3179 Length=6207 Score = 104 bits (114), Expect = 2e-17 Identities = 241/357 (68%), Gaps = 11/357 (3%) Strand=Plus/Minus Query 116849 TTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTC--- 116905 |||||| ||||| | || ||||| ||||||||||||||||||||| | ||| Sbjct 3714 TTCTACTCGTTTCAAAAAGCGATGGAAAACGTGCACTCGGAAATGTAT---AGCCTGTTA 3658 Query 116906 ATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACG 116965 || || |||||| | || | | || || | || | || ||||| || || || Sbjct 3657 ATTGAAACGTACATTCGTGATCCCATTGAAAAACGTCGACTATTCAACGCAATTGAAACA 3598 Query 116966 ATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCC 117025 | ||| ||| | | |||||| ||||| | |||||| | | | || ||| Sbjct 3597 TTTCCGACTGTCGGACAAAAGGCCACATGGGCTTTAAATTGGATCTC--GTCG-GACGCC 3541 Query 117026 GCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGT 117085 ||| ||| ||||| | || || ||||||||||| || || | || |||||||| Sbjct 3540 ACCTACGGTGAGCGTATTGTAGCTTTCGCGGCCGTTGAAGGTATATTTTTTTCGGGTTCA 3481 Query 117086 TTCGCCGCCATATTTTGGCTCAAGAA-ACGCGGCCTCATGCCCGGCCTGACTTTCAGCAA 117144 || | ||| ||||||||||| ||||| | || | | | ||| ||||||| || Sbjct 3480 TTTGGCGCTATATTTTGGCT-AAGAACAAAAGGTATTTTACACGGTTTGACTTTTTCAAA 3422 Query 117145 CGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAA 117201 || || || || ||||| || ||| | |||||||| ||||| |||||| |||| || Sbjct 3421 TGAACTTATTTCTAGGGATGAAGGTTTACATTGCGATTTTGCATGTTTGATGTTGAA 3365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514870654211200