Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3179 248 8e-61 >seq3179 Length=6207 Score = 248 bits (274), Expect = 8e-61 Identities = 576/857 (67%), Gaps = 20/857 (2%) Strand=Plus/Plus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 ||| |||||||||| |||||| |||| || ||| | ||||||||||| | ||| || | Sbjct 3085 TTTCTGATATTCACCAACTCTTCTTTCGAAAAAAATAGTTTTTCCTTCGATTGAGATCAT 3144 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTAT---TTATCGCATCCCAATTCCAA 16059 ||||| |||| || ||||| | || | |||| |||||||| | | ||||| Sbjct 3145 ATCCATGAAATGGAACGGATTGTG---ACTGTTGTATATCTTATCGCAGTCAAGTTCCAG 3201 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 ||| | |||||| || | ||||| ||||| || ||| | | ||| ||||| || Sbjct 3202 CAACAGTCTATCGGCAATGAATTCAATATATTGCGACATCAGTTTTGCGTTAATTCCAAT 3261 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 || | || | |||||||| ||||| | |||||| || || |||||| || Sbjct 3262 CAAGTCCGTCGGTAAAGCTTCTGTCAAAAACTCTTTTTCAATCCGGACTGCTTCATCAAT 3321 Query 16180 TATATCTCTTACTACACTATTTA-ACGGAGGGTTTAATAAGTGTTTAAACATTATACAAG 16238 || | | | | |||| |||| ||| | | | ||| ||||| | ||| | Sbjct 3322 AATTTGACAATGTTTT-TCTTTACACGGCTTGTTAACAATTTTTTTCAACATCAAACATG 3380 Query 16239 CAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTG 16298 ||||||| ||||| || ||||| |||||| || | || |||||||| || | ||| Sbjct 3381 CAAAATCGCAATGTAAACCTTCATCCCTAGAAATAAGTTCATTTGAAAAAGTCAAACCGT 3440 Query 16299 GCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATAC 16358 | | | ||| | || | | ||||||||||||| |||||||||| ||||| ||||||| Sbjct 3441 GTAAAATACCTTTTGTTCTTAGCCAAAATATAGCGCCAAATGAACCCGAAAAAAATATAC 3500 Query 16359 CTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatcc 16418 ||||||| || || || || || | ||||||||||| | | | || |||| Sbjct 3501 CTTCAACGGCCGCGAAAGCTACAATACGCTCACCGTA-GGTGGCGTCCGAC--GAGATCC 3557 Query 16419 attttttagcccaatttgctttttgtttAACA-CAGTTCATGTTCTCTATTGCATTAAAT 16477 | ||| |||||| | || |||||| ||| | ||||| || ||||| || ||| Sbjct 3558 AATTTAAAGCCCATGTGGCCTTTTGTCCGACAGTCGGAAATGTT-TCAATTGCGTTGAAT 3616 Query 16478 AAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCT 16537 | | |||||| || ||| ||| || || || |||| | ||||||||||| Sbjct 3617 AGTCGACGTTTTTCAATGGGATCACGAATGTACGTTTCAATTAACAGGCTATACATTTCC 3676 Query 16538 GAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGT 16597 || || | || ||||| ||| | ||||| || || || ||||||| | || || Sbjct 3677 GAGTGCACGTTTTCCATCGCTTTTTGAAACGAGTAGAAAAATATAGCTTCCGGTACCTGG 3736 Query 16598 ACTTC-AGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAA 16656 | || || |||| | |||| |||| ||| |||||||| |||| ||||| Sbjct 3737 ATATCAAGCAGAAAAGAGT----CTAAATTTTTAGCAACAATTCCATCACTAGTGGCAAA 3792 Query 16657 AAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGA 16716 ||| || | ||| ||| |||||||| |||| ||||| || ||| |||||| Sbjct 3793 AAATGCCAATATATGTGAAATAAAATGCCTTTCACTATCTTTGAGATTTGTCCAGTCGAT 3852 Query 16717 AAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGC--CTTTTTA 16774 |||||||| |||| ||| || || || ||| |||| | || ||| || |||||| Sbjct 3853 GAAATCTTTAGATAGATCAACTTCCTCCACACTCCACGATGAGACAAGTGCTTTTTTTTA 3912 Query 16775 TACATTTTCCATATGTC 16791 ||||| ||||||| || Sbjct 3913 TACATGATCCATATATC 3929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462199110632000