Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq3179 223 3e-53 seq51641 93.3 4e-14 seq14835 87.8 2e-12 >seq3179 Length=6207 Score = 223 bits (246), Expect = 3e-53 Identities = 599/903 (66%), Gaps = 30/903 (3%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||| ||| |||||||||| ||||||| |||| || || ||||||| ||| Sbjct 3071 GACATCACACCCGCTTTCTGATATTCACCAACTCTTCTTTCGAAAAAAATAGTTTTTCCT 3130 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACA--TAAACACTTTATCAC 14015 || | ||| || | ||||| |||| || ||||| |||| | | | ||||| | Sbjct 3131 TCGATTGAGATCATATCCATGAAATGGAACGGATTG--TGACTGTTGTATATCTTATCGC 3188 Query 14016 AACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCAC 14075 | | ||||| | | | |||||| |||||||| ||||||||||| ||||| | | Sbjct 3189 AGTCAAGTTCCAGCAACAGTCTATCGGCAATGAATTCAATATATTGCGACATCAGTTTTG 3248 Query 14076 AATTCATACCTATTA-GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGAC 14134 || || || || | || | | || | || | ||||| |||||||| || Sbjct 3249 CGTTAATTCCAATCAAGTCCGTCGGTAAAGCTTCTG-TCAAAAACTCTTTTTCAATCCGG 3307 Query 14135 ACAGCCTCGTTTATAATAATCGTAATAATTT-CATTAGAAGGAGGATATTTTAGA---TG 14190 || || || | ||||| | ||| ||| | ||| | || | || | | | Sbjct 3308 ACTGCTTCATCAATAATT-TGACAATGTTTTTCTTTACACGGC---TTGTTAACAATTTT 3363 Query 14191 TTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTT 14250 ||| || || ||||| |||||||| ||||| | || ||||| ||| ||||||||| || Sbjct 3364 TTTCAACATCAAACATGCAAAATCGCAATGTAAACCTTCATCCCTAGAAATAAGTTCATT 3423 Query 14251 TGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGA 14310 |||||| || || || | | | ||| | || ||| ||||||||| || | ||||| Sbjct 3424 TGAAAAAGTCAAACCGTGTAAAATACCTTTTGTTCTTAGCCAAAATATAGCGCCAAATGA 3483 Query 14311 TCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGC 14370 || ||||| ||||| || ||||| || || || |||| | || || || | | || Sbjct 3484 ACCCGAAAAAAATATACCTTCAACGGCCGCGAAAGCTACAATACGCTCACCGTAGGTGGC 3543 Query 14371 TTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGT 14430 | ||| ||||| ||| ||||||| | |||| | | | | ||| Sbjct 3544 GTCCGA---CGAGATCCAATTTAAAGCCCATGTGGCCTTTTGTCCGACAGTCGGAAATGT 3600 Query 14431 TTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAG 14490 |||||| || || |||| | || || | | | |||||| || ||||| | Sbjct 3601 TTCAATTGCGTTGAATAGTCGACGTTTTTCAATGGGATCACGAATGTACGTTTCAATTAA 3660 Query 14491 TAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCT 14550 | |||||||||||| ||||| | ||||||||| ||| | ||||| || ||| || | Sbjct 3661 CAGGCTATACATTTCCGAGTGCACGTTTTCCATCGCTTTTTGAAACGAGTAGAAAAATAT 3720 Query 14551 AGCTTCTG--ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATA 14608 |||||| | ||| || | || ||| | | ||||||| | ||| || Sbjct 3721 AGCTTCCGGTACCTGGATATCAAGCAGAAAAGAGTCT-----AAATTTTTAGCAACAATT 3775 Query 14609 CCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAA--GTATTGCTCTTCATTGC 14666 |||||||||| ||||||||||||||||| | | |||||| | || | || || Sbjct 3776 CCATCACTAGTGGCAAAAAATGCCAATATATGTGAAATAAAATGCCTTTCACT--ATCTT 3833 Query 14667 TGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAAC 14726 |||| ||| |||| ||| ||||| ||||| ||||| ||||| || || |||| | Sbjct 3834 TGAGATTTGTCCAGTCGATGAAATCTTTAGATAGATCAACTTCCTCCACACTCCACGATG 3893 Query 14727 TAGCAACAGC--TTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTAC 14784 ||| || |||||||||||| | |||||| || | |||| ||| ||||||| ||| Sbjct 3894 AGACAAGTGCTTTTTTTTATACATGATCCATATATCATGATATTTTATTGGAAAAATTAC 3953 Query 14785 AAA 14787 ||| Sbjct 3954 AAA 3956 >seq51641 Length=269637 Score = 93.3 bits (102), Expect = 4e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||| ||||| || | ||||| || ||||||||||| || || |||||||| ||||| || Sbjct 56653 TTTCTGATACTCCCCGACTCTCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGCGATATGTT 56594 Query 13972 TTCCATAAAATCAAATGGATT 13992 ||||||||||||||||||||| Sbjct 56593 TTCCATAAAATCAAATGGATT 56573 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/140 (75%), Gaps = 6/140 (4%) Strand=Plus/Minus Query 14281 tttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGC 14340 |||||| ||||| ||||||| || || | ||| |||||||| ||||| || |||||||| Sbjct 49179 TTTTTTGAACCAGAATATTGATGCAAAAGCTCCTGAAAAGAAGATTCCTTCCACTGCAGC 49120 Query 14341 AAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA---TATCCATTTTCTAGC 14397 ||| || | | || ||| ||||| |||| | | | ||| ||||| | | |||| Sbjct 49119 AAATGCCACAAGTCTTTCACCAAA-ACTGCTCTCT--TCCGACTGGATCCACTCTATAGC 49063 Query 14398 CCATTCAGAtttttttttAA 14417 ||| |||| ||||||||||| Sbjct 49062 CCAATCAGCTTTTTTTTTAA 49043 >seq14835 Length=167919 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 121521 TTATGTACCTGGAAAAAGAGGTTGGTTAAAGATGAAGAAGGATTACTTAGATGATGGATC 121580 ||||| ||| |||||||| |||||| ||| |||| ||||||||||||| ||| || | Sbjct 36975 TTATGAACCAGGAAAAAGGCATTGGTTGAAGGTGAAAAAGGATTACTTAGCTGAGGGGGC 37034 Query 121581 CATGGCAGATTCTGCAGACTTAGTAGTTTTAGG 121613 |||||| ||| ||||||| ||||| || |||| Sbjct 37035 CATGGCTGATACTGCAGATTTAGTTGTACTAGG 37067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482019293201600