Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3179 187 2e-42 seq1 96.9 3e-15 >seq3179 Length=6207 Score = 187 bits (206), Expect = 2e-42 Identities = 588/897 (66%), Gaps = 22/897 (2%) Strand=Plus/Minus Query 57540 TTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAG--GCAGAAG 57597 ||||| || ||||| || |||||| || || |||| |||||| ||||| ||| | Sbjct 3956 TTTGTAATTTTTCCAATAAAATATCATGATATATGGATCATGTATAAAAAAAAGCACTTG 3897 Query 57598 CATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCC 57657 || | |||| || || ||||| || || ||||| ||| | | ||| ||| | Sbjct 3896 TCTCATCGTGGAGTGTGGAGGAAGTTGATCTATCTAAAGATTTCATCGACTGGACAAATC 3837 Query 57658 TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATG 57717 ||||||| ||| || |||||||| ||| | ||||| ||||| ||| | |||| Sbjct 3836 TCAAAGATAGTGAAAGGCATTTTATTTCACATATATTGGCATTTTTTGCCACTAGTGATG 3777 Query 57718 GTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA-CAAGAAGTGCAAGTGACGGAGGCG 57776 | |||||| | ||||| | | ||||| | || | || || |||| || Sbjct 3776 GAATTGTTGCTAAAAATTTAGACTC----TTTTCTGCTTGATATCCAGGTACCGGAAGCT 3721 Query 57777 AGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTA 57836 | || || ||| |||||| || || ||||||||||| || ||||||||| || Sbjct 3720 ATATTTTTCTACTCGTTTCAAAAAGCGATGGAAAACGTGCACTCGGAAATGTATAGCCTG 3661 Query 57837 CTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAA 57896 | || || |||||| | || | || |||||| |||| |||||||| || ||| Sbjct 3660 TTAATTGAAACGTACATTCGTGATCCCATTGAAAAACGTCGACTATTCAACGCAATTGAA 3601 Query 57897 ACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCC--A 57954 ||| | || | ||| | ||||| ||| | | || ||||| || | | Sbjct 3600 ACATTTCCGACTGTCGGACAAAAGGCCACATGGGCTTTAAATTGGAT----CTCGTCGGA 3545 Query 57955 CGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGG 58014 | ||||| | || ||| | | | || ||||| ||||| ||||||||||| ||||||| Sbjct 3544 C-GCCACCTACGGTGAGCGTATTGTAGCTTTCGCGGCCGTTGAAGGTATATTTTTTTCGG 3486 Query 58015 GCAGCTTTGCGGCAATATTTTGGATGAAGAA-ACGCGGCCTGATGCCCGGCCTGACGTTT 58073 | |||| || ||||||||| | ||||| | || | | | ||| |||| ||| Sbjct 3485 GTTCATTTGGCGCTATATTTTGGCT-AAGAACAAAAGGTATTTTACACGGTTTGACTTTT 3427 Query 58074 AGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTAC 58133 || || | || || | || || ||| | ||| |||||||| || | |||| Sbjct 3426 TCAAATGAACTTATTTCTAGGGATGAAGGTTTACATTGCGATTTTGCATGTTTGATGTTG 3367 Query 58134 TCTCACATTGTCAATAAACCG-ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGT 58192 | ||||| || || ||| | | ||| | | ||||| || || || Sbjct 3366 AAAAAAATTGTTAACAAGCCGTGTAAAGAAAAACAT-TGTCAAATTATTGATGAAGCAGT 3308 Query 58193 CGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAA 58252 | ||| ||||| |||||| | || ||||| ||||| || | || | || || ||| Sbjct 3307 CCGGATTGAAAAAGAGTTTTTGACAGAAGCTTTACCGACGGACTTGATTGGAATTAACGC 3248 Query 58253 TGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAAC-TGATTG 58311 | ||||||| | || ||||| || ||||||| ||||| ||||| |||| ||| || Sbjct 3247 AAAACTGATGTCGCAATATATTGAATTCATTGCCGATAGACTGTTGCTGGAACTTGACTG 3188 Query 58312 -GAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAG 58370 || | | ||||||| | |||||||| |||| ||| || ||||||| |||| Sbjct 3187 CGATAAGAT--ATACAACAGTCACAATCCGTTCCATTTCATGGATATGATCTCAATCGAA 3130 Query 58371 GGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427 || || || | |||||||||| || |||| | |||||||| ||| || |||||| Sbjct 3129 GGAAAAACTATTTTTTTCGAAAGAAGAGTTGGTGAATATCAGAAAGCGGGTGTGATG 3073 >seq1 Length=778493 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC 58158 ||||| | ||| || ||||| || | |||| | |||| || |||||||| | | Sbjct 567418 AGGGTTTACATTGCGACTTTGCCTGTTTGATGTTCAGTCACCTTACAAATAAACCATCAC 567477 Query 58159 GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCG 58218 | | | || | || ||||||| || || || ||| ||| | || ||| | || | Sbjct 567478 AGCAGAGAATAATTGAAATTATCAGAGATGCCGTTAAGATTGAACAAGAATTTCTAACTG 567537 Query 58219 AAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGT 58278 | |||||||||||| | || | || |||||||| ||| | ||| | ||||||| |||| Sbjct 567538 ATGCCCTACCGGTGTCACTGATTGGAATGAACAAAGATCTCATGAAACAGTACATAGAGT 567597 Query 58279 TTGTTGCCGACAGACTTTTGCTCGAACT 58306 ||||||| ||||||||| | || || || Sbjct 567598 TTGTTGCGGACAGACTTCTACTTGACCT 567625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445464839030400