Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq14214 192 2e-44 >seq14214 Length=808 Score = 192 bits (212), Expect = 2e-44 Identities = 406/598 (68%), Gaps = 22/598 (4%) Strand=Plus/Minus Query 18079 GACAAGTGGGCGCTGTACGCAATCGCGCGTCACTGTGACGAGCTGGTATCGGACGGGAAG 18138 |||||||||| |||||| |||| || | || |||||| |||| ||||| Sbjct 794 GACAAGTGGGGCCTGTACCAGATCGGCCGCTATTGCGACGAGATGGTCGATGACGGCTTC 735 Query 18139 GGCGGCAAGGAGCCGCGCTTTACGTGCAAC---TGCGTGATTCAGACAAAGGCGGATGCG 18195 ||||| ||||| |||||||| || |||||| | | || ||| | ||| || || Sbjct 734 GGCGGAAAGGAACCGCGCTTCACCTGCAACGTCTACCTGCAACAGGC---GGCCGACGCC 678 Query 18196 TTCAAGGTCGTGCAGGATATCGCAAGTGTCTTTCGCGGGATTTCGTATTGGGGGGCCGGC 18255 | | ||| |||||||| |||| | || ||||| || | ||||||| || | Sbjct 677 TACCGGGTGGTGCAGGACTTCGCCTCCATTTTCCGCGGCATGGCTTATTGGGCCAACGCC 618 Query 18256 TCCGTCGTCGCGTCGGCCGATATGCCGTCCGATCCGGTCTACCTGTACACGGCCGCGAAC 18315 |||| |||| |||||||| |||||| ||||||||||||| || | || | || ||| Sbjct 617 GCCGTGTTCGCCTCGGCCGACATGCCGGGCGATCCGGTCTACACGTTCTCGTCGGCCAAC 558 Query 18316 GTCGTCGGCGGTTCATTCAAGTACGTCGGCAGCGAGCGCAAGACGCGCTACACGGTCGCG 18375 || |||| || ||||| ||||||||| | || | ||||||||||| || ||| Sbjct 557 GTGGTCGATGGCCGCTTCAACTACGTCGGCTCGGCGCTGACCACGCGCTACACCGTGGCG 498 Query 18376 CTCGTCAGCTACAACGA----TCCGACGAACCAGT-ACAAGCAGGCTGTCGAAGCCGTGC 18430 || || || ||||| ||||| || || | || || ||||| ||| Sbjct 497 CTGGTGTCCTGGAACGACATGTCCGA--AATGGGTCGCCAGAAG---GTCGAGTACGTCG 443 Query 18431 AGGACGACGACGGGATCGCGCGATACGGCGTCATCAAGACGGAGGTCACGGCGTTCGGCT 18490 || || ||| || |||||||| || || || || ||| || || | |||||||| Sbjct 442 AGAACCGCGAAGGCATCGCGCGCTATGGAATCCAGCAGGTGGAAGTGACCGGGTTCGGCT 383 Query 18491 GCACGTCGCAGGCGCAGGCGCACCGTCTCGGTCGGTGGCTGCTGCTGACGTCGCGGTACG 18550 |||| |||| | ||||||||||| |||| |||| |||||||||| || | Sbjct 382 GCACCTCGCGCGGCCAGGCGCACCGGATCGGCAAGTGGATGCTGCTGACCTCCAACCTGG 323 Query 18551 AGACCGGGACGGTCTCGTTTCAGGTCGGGCTCGA--CGGGACGCTTTGTGCGCCGGGACA 18608 |||| | ||||| |||| |||||| || || | | ||| ||||| | || || Sbjct 322 AGACGCGCTCGGTCACGTTCTCGGTCGGCCTGGATGCCTGCCGC---GTGCGGCCGGGCA 266 Query 18609 G-GTGATCGCCGTTGCCGACCCTAAGAAGGCCGGCCGCCGGATCGGCGGCCGTATCCG 18665 | |||||| ||| ||||||| | ||| |||||||| ||||||||||| ||||| Sbjct 265 GCGTGATCCGCGTGGCCGACCAGCACCTGGCGGGCCGCCGCATCGGCGGCCGCATCCG 208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170562313372400