Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3179 273 3e-68 seq51498 141 1e-28 seq51641 107 2e-18 seq43701 102 1e-16 seq12393 100 4e-16 seq1 100 4e-16 seq34416 86.0 8e-12 >seq3179 Length=6207 Score = 273 bits (302), Expect = 3e-68 Identities = 614/912 (67%), Gaps = 13/912 (1%) Strand=Plus/Plus Query 33257 AAAATGATTGTCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTC 33316 |||||||| ||| || | ||||| || ||| ||| || |||||||| || | | |||| Sbjct 3052 AAAATGATGGTCATCCGGTGACATCACACCCGCTTTCTGATATTCACCAACTCTTCTTTC 3111 Query 33317 GAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAAC 33376 ||||||| ||||||||||||| | ||| || | |||||||||| ||||||||| | Sbjct 3112 GAAAAAAATAGTTTTTCCTTCGATTGAGATCATATCCATGAAATGGAACGGATTGTGACT 3171 Query 33377 ATTGTAAAtttttttAAATCCCAATTC-AGAAATCAATCTATCTGCGACGAATTCTATAT 33435 ||||| || || | | | | ||| || || || |||||| || | |||||| |||| Sbjct 3172 GTTGTATATCTTATCGCAGTCAAGTTCCAGCAA-CAGTCTATCGGCAATGAATTCAATAT 3230 Query 33436 ATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAA 33495 || ||||| || || ||||| || | | || | ||| | || | || Sbjct 3231 ATTGCGACATCAGTTTTGCGTTAATTCCAATCAAGTCCGTCGGTAAAGCTTCTGTCAAAA 3290 Query 33496 ATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTG 33555 | |||| |||||| || || | ||||| | | |||||| || ||| Sbjct 3291 ACTCTTTTTCAATCCGGACTGCTTCATCAATAATTTGACAATGTTTTTCTTTACACGGCT 3350 Query 33556 GATGTAATAAATGTTTA-AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTA 33614 | ||| || | ||| |||||||||||||| |||||||| || | ||| || || ||| Sbjct 3351 TGT-TAACAATTTTTTTCAACATCAAACATGCAAAATCGCAATGTAAACCTTCATCCCTA 3409 Query 33615 CTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAAT 33674 ||| | ||| || ||||| || | ||| | | | || || | ||||||||| Sbjct 3410 GAAATAAGTTCATTTGAAAAAGTCAAACCGTGTAAAATACCTTTTGTTCTTAGCCAAAAT 3469 Query 33675 ATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTC 33734 || | | ||||| || ||||| || || ||||| || || || || || | || | | Sbjct 3470 ATAGCGCCAAATGAACCCGAAAAAAATATACCTTCAACGGCCGCGAAAGCTACAATACGC 3529 Query 33735 TCTCCATAACCGGCG-CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 33793 || || || |||| | | | | ||||| ||| |||||| |||||| | | || Sbjct 3530 TCACCGTAGGTGGCGTCCGACGAG-ATCCAATTTAAAGCCCATGTGGCCTTTTGTCCGAC 3588 Query 33794 ACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATA 33853 | || | ||||| || || || || || ||||||| | ||| || || Sbjct 3589 AGTCGGAAATGTTTCAATTGCGTTGAATAGTCGACGTTTTTCAATGGGATCACGAATGTA 3648 Query 33854 AGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCC 33913 || || || || || |||||||||||||| || | |||||| || || | ||||| Sbjct 3649 CGTTTCAATTAACAGGCTATACATTTCCGAGTGCACGTTTTCCATCGCTTTTTGAAACGA 3708 Query 33914 GTAGAAACATCTAGCCTCGGTAATCTGCACTTCT-GTACAAAATCGTTCTGCTAAATTTT 33972 ||||||| || |||| || | | ||| | || | | |||| || ||||||||| Sbjct 3709 GTAGAAAAATATAGCTTCCGGTACCTGGATATCAAGCAGAAAAGAGT----CTAAATTTT 3764 Query 33973 CATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTT 34032 | || ||||||||||| | |||||||| ||||||| |||| ||||||| ||| Sbjct 3765 TAGCAACAATTCCATCACTAGTGGCAAAAAATGCCAATATATGTGAAATAAAATGCCTTT 3824 Query 34033 CGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTG 34092 | | | || || |||| || ||| ||||||||||| ||| ||||| ||||| Sbjct 3825 CACTATCTTTGAGATTTGTCCAGTCGATGAAATCTTTAGATAGATCAACTTCCTCCACAC 3884 Query 34093 TCCAAAATGATGCCTCTGC--CTTTTTATACATATTCCAGATGTCATGATATTGGATTGG 34150 |||| |||| | ||| ||||||||||| |||| || |||||||||| ||||| Sbjct 3885 TCCACGATGAGACAAGTGCTTTTTTTTATACATGATCCATATATCATGATATTTTATTGG 3944 Query 34151 GAAAATAACAAA 34162 ||||| ||||| Sbjct 3945 AAAAATTACAAA 3956 >seq51498 Length=41259 Score = 141 bits (156), Expect = 1e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||| || || | |||||| |||| | | | ||||||||||| ||||||||||| | Sbjct 9118 TTCAAATTCTTTTCCCCAGACATCATGAAGACCAGGACATTCATTTGGACACATCAATGT 9059 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 ||| ||| || || || |||||||| || |||||||||||||| ||||| ||| Sbjct 9058 CCAATCTTGGTTGGTCTCAACACGTTTCATGAACAGATCAGGAATCCACAGAGCATAAAA 8999 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 |||||||||| ||| ||||| || |||||||| || || ||| ||| | ||| | | Sbjct 8998 AAGATCTCTTGCTCTTTGTTCTTCCTTTCCTGTGTTTTTCTTAGCATCCAAGAAATCAAA 8939 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 || || | |||||| ||||||||||| ||||| Sbjct 8938 GATGTCTGCATGCCATGGTTCCAAGTAAATGGC 8906 Score = 109 bits (120), Expect = 7e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 62997 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63056 |||||||| ||||||||||| || || || ||||||||||| || || || || || Sbjct 10079 ATCTCAGTACAAAGATTACTGCATTTTATTGTTCCTAAATTCTGATGGTTGGATTTCCTG 10020 Query 63057 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63116 ||||| ||||| ||||| || ||| |||| |||||||||||| |||| | ||| ||||| Sbjct 10019 TTACAAGCATCTTTATACAGCATGTATGGTGTACCAGTTTCAGTCTGTGCTTCAATAATT 9960 Query 63117 GCTTTCCA 63124 || | ||| Sbjct 9959 GCATACCA 9952 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 ||||| | | || |||||||| || ||||| ||| | || ||||| ||||| || | Sbjct 13563 TCCATGCAAAGAAGTGCATACTGGTCAGTTTTCCATAGTTTGGCTCTGCAATATGAATGT 13504 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| || ||||||||||| ||||| ||||| || ||||||||||| | | || ||| Sbjct 13503 TCAATGACTGACTTTGATCAATGAATGCTCCTCTATCTGCAGCCATGATCAAAATATTCT 13444 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | |||| | || | | ||| |||| ||||||| Sbjct 13443 TCTGAGAGATTTCCCACACAGTTCTGTACAGTTTCTTGATATGATCTGGAA 13393 Score = 86.0 bits (94), Expect = 8e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| || || | | || ||||| | ||||| || || || Sbjct 12509 ACCTGAAATTCTCCTGACAAGACCCTTCTTGAATAGATATTGGTTGTATAAGGCTCAACT 12450 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 || ||||| || |||| || || |||||||| || || ||||||||||| | |||||| Sbjct 12449 GATTCATTGTTACCCAGTATCTGTGCAGTTGAAGCTGTTGGCATAGGTGCTAATAATAAA 12390 Query 62508 CTATT 62512 ||||| Sbjct 12389 CTATT 12385 >seq51641 Length=269637 Score = 107 bits (118), Expect = 2e-18 Identities = 112/145 (77%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 33660 TTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCA 33719 ||||| | ||| ||||| || || || | ||| ||||||||||||||||| ||||||||| Sbjct 49178 TTTTTGAACCAGAATATTGATGCAAAAGCTCCTGAAAAGAAGATTCCTTCCACTGCAGCA 49119 Query 33720 AAGGCAATAAGTCTCTCTCCATAACCG-GCGCTGTC--ATGTATCCACTTTTGAGCCCAA 33776 || || | |||||| || ||| ||| | | || | || ||||||| | ||||||| Sbjct 49118 AATGCCACAAGTCTTTCACCAAAACTGCTCTCTTCCGACTGGATCCACTCTATAGCCCAA 49059 Query 33777 TCGGCCTTCTTTTTTACACAAGGCA 33801 || || || ||||| |||||||||| Sbjct 49058 TCAGCTTTTTTTTTAACACAAGGCA 49034 >seq43701 Length=19211 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 ||||| | | || |||||||| || ||||| ||| | || ||||| ||||| || | Sbjct 6107 TCCATGCAAAGAAGTGCATACTGGTCAGTTTTCCATAGTTTGGCTCTGCAATATGAATGT 6166 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| || ||||||||||| ||||| ||||| || ||||||||||| | | || ||| Sbjct 6167 TCAATGACTGACTTTGATCAATGAATGCTCCTCTATCTGCAGCCATGATCAAAATATTCT 6226 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | |||| | || | | ||| |||| ||||||| Sbjct 6227 TCTGAGAGATTTCCCACACAGTTCTGTACAGTTTCTTGATATGATCTGGAA 6277 >seq12393 Length=14882 Score = 100 bits (110), Expect = 4e-16 Identities = 98/125 (78%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 62997 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63056 |||||||| ||||| ||||| || || || ||||||||||| || || || ||| || Sbjct 894 ATCTCAGTACAAAGGTTACTGCATTTTATTGTTCCTAAATTCTGATGGTTGGATTTTCTG 953 Query 63057 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT- 63115 ||||| ||||| ||||| || ||| |||| ||||||||||| |||| | ||| || || Sbjct 954 TTACAAGCATCTTTATACAGCATGTATGGTGTACCAGTTTCTGTCTGTGCTTCAATGATA 1013 Query 63116 CGCTT 63120 ||||| Sbjct 1014 CGCTT 1018 >seq1 Length=778493 Score = 100 bits (110), Expect = 4e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| |||||||| || || ||||| || ||||||||||| ||||| || || |||||| Sbjct 568330 GACATTACTCCCATCTTCTGATATTCTCCAACACGTTTTTCAAAAAAGTTTGTCTTTCCT 568271 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 || | ||| || ||||||||||| ||||| ||||| Sbjct 568270 TCAAGTGAAATGTTTTCCATGAAGTCAAAGGGATT 568236 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 33851 ATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAA 33910 ||| ||||| ||||||||||| ||||| || |||||||||||||| || || || || || Sbjct 566570 ATATGTATCAATCAAAAGACTGTACATCTCTGAATGAATGTTTTCTATTGCTATTTGGAA 566511 Query 33911 TCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || || ||||| | || || |||| || | |||| || |||||| || Sbjct 566510 CCCATAAAAACAACGCGCTTCTGTAACTTGTATTTCTTGACTAAATCGCTC 566460 >seq34416 Length=2095 Score = 86.0 bits (94), Expect = 8e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 63728 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63787 ||||||||| || ||||| | ||||||||||| || | ||| | |||||||||||| Sbjct 1727 CTCAATAGCGCCTTCAATATCGCTGTGATGAATTCCAACAGAGACTCTCATTAACATGTG 1668 Query 63788 CTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63844 ||||| | |||| ||| ||| |||||||||||||| || || |||| | ||| Sbjct 1667 TTGAGGACGTTCAGCAACTTTACCATTTATTTTCAACAAATATGACCTTTCAAGAGT 1611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629391528393600