Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3179 235 5e-57 seq51498 123 2e-23 seq43701 107 2e-18 seq1 89.7 5e-13 >seq3179 Length=6207 Score = 235 bits (260), Expect = 5e-57 Identities = 595/887 (67%), Gaps = 31/887 (3%) Strand=Plus/Plus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATAT-ATA 11397 || |||||||||| ||||| || |||||||||| |||| || ||||| | ||| || ||| Sbjct 3086 TTCTGATATTCACCAACTCTTCTTTCGAAAAAAATAGTTTTTCCTTCGATTGAGATCATA 3145 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 ||||| || || ||||| | ||| | | || || || | | || || Sbjct 3146 -TCCATGAAATGGAACGGATTGTGACTGTTGTATATCTTATCGCAGTCAAGTTCCAGCAA 3204 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 | |||||| || | |||||| ||||| || ||||| | || || || || | Sbjct 3205 CAGTCTATCGGCAATGAATTCAATATATTGCGACATCAGTTTTGCGTTAATTCCAATCAA 3264 Query 11518 ATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGC---ATCAATGAT 11574 ||| ||| | ||| ||||||||||||| ||||| || || || |||||| || Sbjct 3265 GTCCGTCGGTAAAGCTTCTGTCAAAAACTCTTTTTCAATCCGGACTGCTTCATCAATAAT 3324 Query 11575 TATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTA-AACATTAAACACG 11633 | ||| | | ||| ||| | || | ||| || | ||| ||||| ||||| | Sbjct 3325 TT--GACAATGTTT-TTCTTTACACGGCTTGT-TAACAATTTTTTTCAACATCAAACATG 3380 Query 11634 CAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGG 11693 ||||||| |||||||||||||| || ||| || |||||||| ||||| || || ||| Sbjct 3381 CAAAATCGCAATGTAAACCTTCATCCCTAGAAATAAGTTCATTTGAAAAAGTCAAACCGT 3440 Query 11694 GCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTC 11753 | | | ||| | || ||| |||||||||||| |||||||||| ||||| ||||| | Sbjct 3441 GTAAAATACCTTTTGTTCTTAGCCAAAATATAGCGCCAAATGAACCCGAAAAAAATATAC 3500 Query 11754 CCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATT 11813 | || || || || || ||||| | | || || || || || ||||| | Sbjct 3501 CTTCAACGGCCGCGAAAGCTACAATACGCTCACCGTAGGTGGCGTCCGACGAGATCCAAT 3560 Query 11814 TTCTGGCCCAATCAGCTTTCTTTTTTACG-CATTC--CATTGTTTCTATAGCGTTAAATA 11870 || ||||| || ||||| | || || || | |||||| || ||||| |||| Sbjct 3561 TTAAAGCCCATGTGGC---CTTTTGTCCGACAGTCGGAAATGTTTCAATTGCGTTGAATA 3617 Query 11871 AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTG 11930 | |||||| || ||| | | || || || ||||| | ||||||||||| | Sbjct 3618 GTCGACGTTTTTCAATGGGATCACGAATGTACGTTTCAATTAACAGGCTATACATTTCCG 3677 Query 11931 AATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTA 11990 | || | |||||||| ||| ||||||| |||||| || || || | ||| | Sbjct 3678 AGTGCACGTTTTCCATCGCTTTTTGAAACGAGTAGAAAAATATAGCTTCCGGTACCTGGA 3737 Query 11991 CATCCA-CATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049 ||| | || |||| | ||||||| | | ||||| |||||||||| |||||| Sbjct 3738 TATCAAGCAGAAAAGAGT----CTAAATTTTTAGCAACAATTCCATCACTAGTGGCAAAA 3793 Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTC---GTCTTT-AGTTAATTTATCCCAATC 12105 ||||| | ||||||| ||||| | |||| ||||| || |||| | ||| || Sbjct 3794 AATGCCAATATATGTGAAATAAAATGCCTTTCACTATCTTTGAG---ATTTGT-CCAGTC 3849 Query 12106 ATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTG--ATTGT 12163 |||||||| |||| ||| ||||| || || |||| | | | || || | Sbjct 3850 GATGAAATCTTTAGATAGATCAACTTCCTCCACACTCCACGATGAGACAAGTGCTTTTTT 3909 Query 12164 TTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 |||||||| |||| ||||||||||| || || || ||||| || || Sbjct 3910 TTATACATGATCCATATATCATGATATTTTATTGGAAAAATTACAAA 3956 >seq51498 Length=41259 Score = 123 bits (136), Expect = 2e-23 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 37137 AACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAAT 37196 ||||||||| ||||| || || || ||||||| ||| |||||| | ||||| || |||| Sbjct 12510 AACCTGAAATTCTCCTGACAAGACCCTTCTTGAATAGATATTGGTTGTATAAGGCTCAAC 12451 Query 37197 GGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAG 37256 || ||||| |||| | ||| || | || || || || ||||| ||||||| || | Sbjct 12450 TGATTCATTGTTACCCAGTATCTGTGCAGTTGAAGCTGTTGGCATAGGTGCTAATAATAA 12391 Query 37257 GCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTT-AGTTCATTCCAATCCCATAAAT 37315 ||||| | || ||||||||| ||| ||||| || ||| ||| |||||| ||||| Sbjct 12390 ACTATTACGTAAACCATGTGTAGCAATG-TCTTTCTTCAGTGCATCCCAATCATGTAAAT 12332 Query 37316 CTGTTGG-GTTCTTTAACCACATATCATATTGTA 37348 | ||||| ||| | |||||||||||| |||| Sbjct 12331 CGGTTGGAGTTACATC-CCACATATCATACTGTA 12299 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 37375 TTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCA 37434 ||||| | ||||| | ||||| || ||| | ||| ||||| | || | || | Sbjct 12029 TTATAAGATTCATATGCTCCGTCTCGTTCAGCCAATTCACAACTGGCTTTCAAGGCACCG 11970 Query 37435 TAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCA 37494 |||||||| ||||| || |||||| |||| |||| ||||||| || || || || | | Sbjct 11969 TAATATATAGTTTCAAATATTTGTTTATTCAATAACATTGCTTCATCACTGTCAAAAGGA 11910 Query 37495 TAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGT 37554 | | || ||||||||| ||||||| | |||||||||||| ||||| ||||| | |||| Sbjct 11909 AACCTCATTAATATAAATGCATCAGCAAGACCCTGAACACCAATACCAATGGGACGATGT 11850 Query 37555 TTCTTATT 37562 | |||| Sbjct 11849 CGCATATT 11842 Score = 89.7 bits (98), Expect = 5e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 ||||| | | || |||||||||||||||||| | || | || | | |||| || Sbjct 13563 TCCATGCAAAGAAGTGCATACTGGTCAGTTTTCCATAGTTTGGCTCTGCAATATGAATGT 13504 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| ||| ||||||||||| || || || ||||| || || ||||| |||||| | Sbjct 13503 TCAATGACTGACTTTGATCAATGAATGCTCCTCTATCTGCAGCCATGATCAAAATATTCT 13444 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGG 37031 | ||||| || ||||| || ||| | || | || || |||| |||||| Sbjct 13443 TCTGAGAGATTTCCCACACAGTTCTGTACAGTTTCTTGATATGATCTGG 13395 >seq43701 Length=19211 Score = 107 bits (118), Expect = 2e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 37401 TTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTAT 37460 || ||| | ||| ||||| | || | || | |||||||| ||||| ||||||||| | Sbjct 13296 TTCAGCCAATTCACAACTGGCTTTCAAGGCACCGTAATATATAGTTTCAAAAATTTGTTT 13355 Query 37461 ATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGC 37520 ||| |||| ||||||| || || || || | | | | || ||||||||| ||||||| Sbjct 13356 ATTCAATAACATTGCTTCATCACTGTCAAAGGGAAACCTCATTAATATAAATGCATCAGC 13415 Query 37521 CAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATT 37562 | |||||||||||| ||||| ||||| | |||| | |||| Sbjct 13416 AAGACCCTGAACACCAATACCAATGGGACGATGTCGCATATT 13457 Score = 89.7 bits (98), Expect = 5e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 ||||| | | || |||||||||||||||||| | || | || | | |||| || Sbjct 6107 TCCATGCAAAGAAGTGCATACTGGTCAGTTTTCCATAGTTTGGCTCTGCAATATGAATGT 6166 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| ||| ||||||||||| || || || ||||| || || ||||| |||||| | Sbjct 6167 TCAATGACTGACTTTGATCAATGAATGCTCCTCTATCTGCAGCCATGATCAAAATATTCT 6226 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGG 37031 | ||||| || ||||| || ||| | || | || || |||| |||||| Sbjct 6227 TCTGAGAGATTTCCCACACAGTTCTGTACAGTTTCTTGATATGATCTGG 6275 >seq1 Length=778493 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || || || || || ||||||||||| || || || || ||||||| || | |||||| Sbjct 567011 TCATCCCTGCTGATAAGTTCATTAGAGAAGGTCAAACCAGGCATCAGACCCCTTTTTTTC 566952 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || | |||||| || ||||| || || || || || ||||| || ||||| Sbjct 566951 AACCAGAAAATTGAAGCAAACGAGCCAGAGAAAAAGATCCCTTCAACAGCAGCGAATGCC 566892 Query 11774 ACTACTCTTTCTCCATA 11790 || || | ||| ||||| Sbjct 566891 ACAACCCGTTCACCATA 566875 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 ||||||||| || || | ||| ||||| ||||||||||| ||||| || |||||||| || Sbjct 566570 ATATGTATCAATCAAAAGACTGTACATCTCTGAATGAATGTTTTCTATTGCTATTTGGAA 566511 Query 11959 TCCATAGAAACATCGTGCCTCTG 11981 ||||| ||||| || || |||| Sbjct 566510 CCCATAAAAACAACGCGCTTCTG 566488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468207842972800