Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3179 304 2e-77 seq51498 136 5e-27 seq43701 102 1e-16 seq1 102 1e-16 seq12393 100 4e-16 >seq3179 Length=6207 Score = 304 bits (336), Expect = 2e-77 Identities = 644/943 (68%), Gaps = 21/943 (2%) Strand=Plus/Plus Query 35814 AAAAATCAACATCTAGA-GAAAAATGATTGTCTTCTTGAGACATAACTCCCATTTTTTGG 35872 |||||||| || | || | |||||||| ||| || | ||||| || ||| ||| || Sbjct 3033 AAAAATCA-CAACCAGTTGTAAAATGATGGTCATCCGGTGACATCACACCCGCTTTCTGA 3091 Query 35873 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATG 35932 |||||||| || | | ||||||||||| ||||||| ||||| | ||| || | |||||| Sbjct 3092 TATTCACCAACTCTTCTTTCGAAAAAAATAGTTTTTCCTTCGATTGAGATCATATCCATG 3151 Query 35933 AAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATT-CAGAAATCAATCT 35991 |||| ||| |||||| | || || || || | | | | || ||| || || ||| Sbjct 3152 AAATGGAACGGATTGTGACTGTTGTATATCTTATCGCAGTCAAGTTCCAGCAA-CAGTCT 3210 Query 35992 ATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT-AAGTTTAA 36050 ||| || | ||||| |||||| ||||| || || ||||| || |||| Sbjct 3211 ATCGGCAATGAATTCAATATATTGCGACATCAGTTTTGCGTTAATTCCAATCAAGTCCGT 3270 Query 36051 CTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA-TAGAT 36109 | || | ||| | || | ||| |||| |||||| ||| || || |||| | || Sbjct 3271 C-GGTAAAGCTTCTGTCAAAAACTCTTTTTCAATCCGGACTGCTTCATCAATAATTTGAC 3329 Query 36110 ATTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 36167 | | | |||||| || ||| || ||||| | ||| |||||||||||||| |||| Sbjct 3330 AAT-GTTTTTCTTTACACGGCTTGTTAACAAT--TTTTTTCAACATCAAACATGCAAAAT 3386 Query 36168 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 36227 |||| |||| ||| || || ||| ||| | ||| || ||||| || | ||| | | | Sbjct 3387 CGCAATGTAAACCTTCATCCCTAGAAATAAGTTCATTTGAAAAAGTCAAACCGTGTAAAA 3446 Query 36228 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTA 36287 || || | ||||||||||| | ||||||| || ||||| || || ||||| | Sbjct 3447 TACCTTTTGTTCTTAGCCAAAATATAGCGCCAAATGAACCCGAAAAAAATATACCTTCAA 3506 Query 36288 CTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-ACTGTCATGTATCCACTTTTGA 36346 | ||||| || || | || | ||| || || ||| | | | | ||||| ||| | Sbjct 3507 CGGCCGCGAAAGCTACAATACGCTCACCGTAGGTGGCGTCCGACGAG-ATCCAATTTAAA 3565 Query 36347 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 36406 ||||| |||||| | | ||| || | ||| || || || || || || | Sbjct 3566 GCCCATGTGGCCTTTTGTCCGACAGTCGGAAATGTTTCAATTGCGTTGAATAGTCGACGT 3625 Query 36407 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 36466 |||||| | ||| || || || ||||| || || |||||||||||||| || | | Sbjct 3626 TTTTCAATGGGATCACGAATGTACGTTTCAATTAACAGGCTATACATTTCCGAGTGCACG 3685 Query 36467 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC-TGT 36525 ||||| || || ||||||| ||||||| || |||| || | | ||| | || | Sbjct 3686 TTTTCCATCGCTTTTTGAAACGAGTAGAAAAATATAGCTTCCGGTACCTGGATATCAAGC 3745 Query 36526 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 36585 | |||| || ||||||||| | || ||||| ||||| | |||||||| ||||| Sbjct 3746 AGAAAAGAGT----CTAAATTTTTAGCAACAATTCCATCACTAGTGGCAAAAAATGCCAA 3801 Query 36586 TACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTT 36645 || |||| ||||||| |||| | | | || || |||| || ||| |||||| Sbjct 3802 TATATGTGAAATAAAATGCCTTTCACTATCTTTGAGATTTGTCCAGTCGATGAAATCTTT 3861 Query 36646 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC--CTTTTTATACATATTC 36703 ||||| ||| ||||| ||||| |||| |||| | ||| ||||||||||| || Sbjct 3862 AGATAGATCAACTTCCTCCACACTCCACGATGAGACAAGTGCTTTTTTTTATACATGATC 3921 Query 36704 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTT 36746 || || |||||||||| ||||||||||| ||||| | || || Sbjct 3922 CATATATCATGATATTTTATTGGAAAAATTACAAAGCGATGTT 3964 >seq51498 Length=41259 Score = 136 bits (150), Expect = 5e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 ||| || || | |||||| |||| | | ||||||||||||| ||||||||||| | Sbjct 9118 TTCAAATTCTTTTCCCCAGACATCATGAAGACCAGGACATTCATTTGGACACATCAATGT 9059 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||| ||| || || || |||||||| || |||||||||||||| ||||| ||||| Sbjct 9058 CCAATCTTGGTTGGTCTCAACACGTTTCATGAACAGATCAGGAATCCACAGAGC-ATAAA 9000 Query 66101 TAA-ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 66159 || |||||| | ||| ||||| || |||||||| || || ||| ||| | ||| | | Sbjct 8999 AAAGATCTCTTGCTCTTTGTTCTTCCTTTCCTGTGTTTTTCTTAGCATCCAAGAAATCAA 8940 Query 66160 TAATATCATAATGCCACGGTTCCAAGTATATGGC 66193 || || |||||| ||||||||||| ||||| Sbjct 8939 AGATGTCTGCATGCCATGGTTCCAAGTAAATGGC 8906 Score = 109 bits (120), Expect = 7e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 65790 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 65849 |||||||| ||||||||||| || || || ||||||||||| || || || || || Sbjct 10079 ATCTCAGTACAAAGATTACTGCATTTTATTGTTCCTAAATTCTGATGGTTGGATTTCCTG 10020 Query 65850 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 65909 ||||| ||||| ||||| || ||| |||| |||||||||||| |||| | ||| ||||| Sbjct 10019 TTACAAGCATCTTTATACAGCATGTATGGTGTACCAGTTTCAGTCTGTGCTTCAATAATT 9960 Query 65910 GCTTTCCA 65917 || | ||| Sbjct 9959 GCATACCA 9952 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 ||||| | | || |||||||| || ||||| ||| | || ||||| ||||| || | Sbjct 13563 TCCATGCAAAGAAGTGCATACTGGTCAGTTTTCCATAGTTTGGCTCTGCAATATGAATGT 13504 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| || ||||||||||| ||||| ||||| || ||||||||||| | | || ||| Sbjct 13503 TCAATGACTGACTTTGATCAATGAATGCTCCTCTATCTGCAGCCATGATCAAAATATTCT 13444 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | |||| | || | | ||| |||| ||||||| Sbjct 13443 TCTGAGAGATTTCCCACACAGTTCTGTACAGTTTCTTGATATGATCTGGAA 13393 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| || || | | || ||||| | ||||| || || || Sbjct 12509 ACCTGAAATTCTCCTGACAAGACCCTTCTTGAATAGATATTGGTTGTATAAGGCTCAACT 12450 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 || ||||| || |||| || || |||||||| || || ||||||||||| | |||||| Sbjct 12449 GATTCATTGTTACCCAGTATCTGTGCAGTTGAAGCTGTTGGCATAGGTGCTAATAATAAA 12390 Query 65301 CTATT 65305 ||||| Sbjct 12389 CTATT 12385 >seq43701 Length=19211 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 ||||| | | || |||||||| || ||||| ||| | || ||||| ||||| || | Sbjct 6107 TCCATGCAAAGAAGTGCATACTGGTCAGTTTTCCATAGTTTGGCTCTGCAATATGAATGT 6166 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| || ||||||||||| ||||| ||||| || ||||||||||| | | || ||| Sbjct 6167 TCAATGACTGACTTTGATCAATGAATGCTCCTCTATCTGCAGCCATGATCAAAATATTCT 6226 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | |||| | || | | ||| |||| ||||||| Sbjct 6227 TCTGAGAGATTTCCCACACAGTTCTGTACAGTTTCTTGATATGATCTGGAA 6277 >seq1 Length=778493 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 36427 ATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAA 36486 ||||||||||||||||||||| ||||| || |||||||||||||| || || ||||| || Sbjct 566570 ATATGTATCAATCAAAAGACTGTACATCTCTGAATGAATGTTTTCTATTGCTATTTGGAA 566511 Query 36487 TCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 || || ||||| | || || |||| |||| |||| || |||||| || Sbjct 566510 CCCATAAAAACAACGCGCTTCTGTAACTTGTATTTCTTGACTAAATCGCTC 566460 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 35852 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 35911 ||||| |||||||| || || ||||| || ||||||||||| ||||| || || || ||| Sbjct 568330 GACATTACTCCCATCTTCTGATATTCTCCAACACGTTTTTCAAAAAAGTTTGTCTTTCCT 568271 Query 35912 TCTAATGATATATTTTCCATGAAATCGAATGGATT 35946 || | ||| || ||||||||||| || || ||||| Sbjct 568270 TCAAGTGAAATGTTTTCCATGAAGTCAAAGGGATT 568236 >seq12393 Length=14882 Score = 100 bits (110), Expect = 4e-16 Identities = 98/125 (78%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 65790 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 65849 |||||||| ||||| ||||| || || || ||||||||||| || || || ||| || Sbjct 894 ATCTCAGTACAAAGGTTACTGCATTTTATTGTTCCTAAATTCTGATGGTTGGATTTTCTG 953 Query 65850 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT- 65908 ||||| ||||| ||||| || ||| |||| ||||||||||| |||| | ||| || || Sbjct 954 TTACAAGCATCTTTATACAGCATGTATGGTGTACCAGTTTCTGTCTGTGCTTCAATGATA 1013 Query 65909 CGCTT 65913 ||||| Sbjct 1014 CGCTT 1018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657727546100800