Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3179 289 4e-73 seq51498 132 7e-26 seq51641 111 2e-19 seq43701 105 1e-17 seq1 100 4e-16 seq12393 91.5 2e-13 seq34416 86.0 9e-12 >seq3179 Length=6207 Score = 289 bits (320), Expect = 4e-73 Identities = 620/914 (68%), Gaps = 17/914 (2%) Strand=Plus/Plus Query 49635 AAAATGATTATCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTC 49694 |||||||| || || | ||||| || ||| ||| || |||||||| || | | |||| Sbjct 3052 AAAATGATGGTCATCCGGTGACATCACACCCGCTTTCTGATATTCACCAACTCTTCTTTC 3111 Query 49695 GAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAAC 49754 ||||||| ||||||||||||| | ||| || | |||||||||| ||||||||| | Sbjct 3112 GAAAAAAATAGTTTTTCCTTCGATTGAGATCATATCCATGAAATGGAACGGATTGTGACT 3171 Query 49755 ATTATAAAtttttttAAATCCCAATTC-AGAAATCAATCTATCCGCGACAAATTCTATAT 49813 || || || || | | | | ||| || || || |||||| || | ||||| |||| Sbjct 3172 GTTGTATATCTTATCGCAGTCAAGTTCCAGCAA-CAGTCTATCGGCAATGAATTCAATAT 3230 Query 49814 ATGTTTTCATCATTTCACAATTCATTCCTAT-AAGTTTAACTGGAAGAGCCGCAGTAAGA 49872 || ||||| || || ||||| || |||| | | || ||| | || | | Sbjct 3231 ATTGCGACATCAGTTTTGCGTTAATTCCAATCAAGTCCGTCGGTAA-AGCTTCTGTCAAA 3289 Query 49873 AATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGG- 49931 || |||| |||||| || || || ||||| | | |||||| || ||| Sbjct 3290 AACTCTTTTTCAATCCGGACTGCTTCATCAATAATTTGACAATGTTTTTCTTTACACGGC 3349 Query 49932 -TGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTC 49990 || |||| | ||| |||||||||||||| |||||||| || | ||| || || | Sbjct 3350 TTGTTAACAATT--TTTTTCAACATCAAACATGCAAAATCGCAATGTAAACCTTCATCCC 3407 Query 49991 TACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAA 50050 || ||| ||||| || ||||| || | ||| | | | || || | ||||||| Sbjct 3408 TAGAAATAAGTTCATTTGAAAAAGTCAAACCGTGTAAAATACCTTTTGTTCTTAGCCAAA 3467 Query 50051 ATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTC 50110 |||| | ||||||| || ||||| || || ||||| || || || || || |||| | Sbjct 3468 ATATAGCGCCAAATGAACCCGAAAAAAATATACCTTCAACGGCCGCGAAAGCTACAATAC 3527 Query 50111 TCTCTCCATAACTGGCG-CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 50169 ||| || || ||||| | | | | ||||| ||| |||||| |||||| | | Sbjct 3528 GCTCACCGTAGGTGGCGTCCGACGAG-ATCCAATTTAAAGCCCATGTGGCCTTTTGTCCG 3586 Query 50170 ACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA 50229 ||| || | ||||| || || || || || ||||||| | ||| || Sbjct 3587 ACAGTCGGAAATGTTTCAATTGCGTTGAATAGTCGACGTTTTTCAATGGGATCACGAATG 3646 Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 || || || || || || |||||||||||||| || | |||||| || || | ||||| Sbjct 3647 TACGTTTCAATTAACAGGCTATACATTTCCGAGTGCACGTTTTCCATCGCTTTTTGAAAC 3706 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT-GTACAAAATCGTTCAGCTAAATT 50348 ||||||| || |||| || | | ||| | || | | |||| || ||||||| Sbjct 3707 GAGTAGAAAAATATAGCTTCCGGTACCTGGATATCAAGCAGAAAAGAGT----CTAAATT 3762 Query 50349 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTT 50408 || | || ||||| ||||| | |||||||| ||||||| |||| |||||||| | Sbjct 3763 TTTAGCAACAATTCCATCACTAGTGGCAAAAAATGCCAATATATGTGAAATAAAATGCCT 3822 Query 50409 TTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCAC 50468 ||| | | | || || |||| || ||| ||||||||||| ||| ||||| ||||| Sbjct 3823 TTCACTATCTTTGAGATTTGTCCAGTCGATGAAATCTTTAGATAGATCAACTTCCTCCAC 3882 Query 50469 TGTCCAAAATGATGCCTCTGC--CTTTTTATACATATTCCAGATGTCATGATATTGGATT 50526 |||| |||| | ||| ||||||||||| |||| || |||||||||| ||| Sbjct 3883 ACTCCACGATGAGACAAGTGCTTTTTTTTATACATGATCCATATATCATGATATTTTATT 3942 Query 50527 GGGAAAATAACAAA 50540 || ||||| ||||| Sbjct 3943 GGAAAAATTACAAA 3956 >seq51498 Length=41259 Score = 132 bits (146), Expect = 7e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||| || || | |||||| ||||| | | ||||||||||| | ||||||||||| | Sbjct 9118 TTCAAATTCTTTTCCCCAGACATCATGAAGACCAGGACATTCATTTGGACACATCAATGT 9059 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979 ||| ||| | || || |||||||| || |||||||||||||| ||||| ||| Sbjct 9058 CCAATCTTGGTTGGTCTCAACACGTTTCATGAACAGATCAGGAATCCACAGAGCATAAAA 8999 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 |||||||| | ||| || || || |||||||| || || ||| ||| | ||| | | Sbjct 8998 AAGATCTCTTGCTCTTTGTTCTTCCTTTCCTGTGTTTTTCTTAGCATCCAAGAAATCAAA 8939 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGC 80072 || || | |||||| ||||||||||| ||||| Sbjct 8938 GATGTCTGCATGCCATGGTTCCAAGTAAATGGC 8906 Score = 105 bits (116), Expect = 1e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 ||||| | |||| |||||||| || ||||| ||| | || ||||| ||||| || | Sbjct 13563 TCCATGCAAAGAAGTGCATACTGGTCAGTTTTCCATAGTTTGGCTCTGCAATATGAATGT 13504 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| || ||||||||||| ||||| ||||| || ||||||||||| | | || ||| Sbjct 13503 TCAATGACTGACTTTGATCAATGAATGCTCCTCTATCTGCAGCCATGATCAAAATATTCT 13444 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | |||| | || | | ||| |||| ||||||| Sbjct 13443 TCTGAGAGATTTCCCACACAGTTCTGTACAGTTTCTTGATATGATCTGGAA 13393 Score = 100 bits (110), Expect = 4e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| || || | | || ||||| | ||||| || || || Sbjct 12509 ACCTGAAATTCTCCTGACAAGACCCTTCTTGAATAGATATTGGTTGTATAAGGCTCAACT 12450 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 |||||||| || |||| || || |||||||| || |||||||||||||| | |||||| Sbjct 12449 GATTCATTGTTACCCAGTATCTGTGCAGTTGAAGCTGTTGGCATAGGTGCTAATAATAAA 12390 Query 79180 CTATT 79184 ||||| Sbjct 12389 CTATT 12385 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 || ||||| || || ||||| || || || ||||||||||| || || || || || Sbjct 10079 ATCTCAGTACAAAGATTACTGCATTTTATTGTTCCTAAATTCTGATGGTTGGATTTCCTG 10020 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 79788 ||||| ||||| ||||| || ||| | || |||||||||||| |||| | ||| ||||| Sbjct 10019 TTACAAGCATCTTTATACAGCATGTATGGTGTACCAGTTTCAGTCTGTGCTTCAATAATT 9960 Query 79789 GCTTTCCA 79796 || | ||| Sbjct 9959 GCATACCA 9952 >seq51641 Length=269637 Score = 111 bits (122), Expect = 2e-19 Identities = 113/145 (78%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 50038 TTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCA 50097 ||||| | ||| ||||| || ||||| | || ||||||||||||||||| ||||| ||| Sbjct 49178 TTTTTGAACCAGAATATTGATGCAAAAGCTCCTGAAAAGAAGATTCCTTCCACTGCAGCA 49119 Query 50098 AAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTC--ATGTATCCACTTTTGAGCCCAA 50154 || || |||||||| || ||| ||||| | || | || ||||||| | ||||||| Sbjct 49118 AATGCCACAAGTCTTTCACCAAAACTGCTCTCTTCCGACTGGATCCACTCTATAGCCCAA 49059 Query 50155 TCGGCCTTCTTTTTTACACAAGGCA 50179 || || || ||||| |||||||||| Sbjct 49058 TCAGCTTTTTTTTTAACACAAGGCA 49034 >seq43701 Length=19211 Score = 105 bits (116), Expect = 1e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 ||||| | |||| |||||||| || ||||| ||| | || ||||| ||||| || | Sbjct 6107 TCCATGCAAAGAAGTGCATACTGGTCAGTTTTCCATAGTTTGGCTCTGCAATATGAATGT 6166 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| || ||||||||||| ||||| ||||| || ||||||||||| | | || ||| Sbjct 6167 TCAATGACTGACTTTGATCAATGAATGCTCCTCTATCTGCAGCCATGATCAAAATATTCT 6226 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | |||| | || | | ||| |||| ||||||| Sbjct 6227 TCTGAGAGATTTCCCACACAGTTCTGTACAGTTTCTTGATATGATCTGGAA 6277 Score = 86.0 bits (94), Expect = 9e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||| || || || || | | || ||||| | ||||| || || || Sbjct 7276 ACCTGAAATTCTTTTGATAAAACCCTTCTTGAATAGATATTGGTTGTATAAGGCTCAACT 7335 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 |||||||| || |||| || || |||||||| || |||||||||||||| | |||||| Sbjct 7336 GATTCATTGTTACCCAGTATCTGTGCAGTTGAAGCTGTTGGCATAGGTGCTAATAATAAA 7395 Query 79180 CTATT 79184 ||||| Sbjct 7396 CTATT 7400 >seq1 Length=778493 Score = 100 bits (110), Expect = 4e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||| |||||||| || || ||||| || ||||||||||| ||||| || || |||||| Sbjct 568330 GACATTACTCCCATCTTCTGATATTCTCCAACACGTTTTTCAAAAAAGTTTGTCTTTCCT 568271 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATT 49748 || | ||| || ||||||||||| ||||| ||||| Sbjct 568270 TCAAGTGAAATGTTTTCCATGAAGTCAAAGGGATT 568236 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 50344 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 50403 ||||||||||| || || || |||||||| ||||| || || || ||||| |||||| Sbjct 565233 AAATTTTCATTGACAATCCCATCACTGGCAGCAAAGAATGCTAAAACATGCGAAATAAAA 565174 Query 50404 TGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCT 50463 || | || | | | || | ||||| | | ||||| || | || ||||| Sbjct 565173 TGCCTCTCATCGTCCTTGAGGCTGGCCCAATGAGCCAAGTCTTTTGAAAGGTCCACTTCC 565114 Query 50464 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGG 50523 || | ||||| || || || ||||| || || ||||| | ||||||||| || || | Sbjct 565113 TCAGCAGTCCAGAACGAAGCTTCTGCTTTCTTGTACATCTGCCAGATGTCGTGGTACTTT 565054 Query 50524 ATTGGGAAAATAACAAA 50540 ||||| ||||| ||||| Sbjct 565053 ATTGGAAAAATTACAAA 565037 Score = 86.0 bits (94), Expect = 9e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 50229 ATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAA 50288 ||| ||||| ||||||||||| ||||| || |||||||||||||| || || || || || Sbjct 566570 ATATGTATCAATCAAAAGACTGTACATCTCTGAATGAATGTTTTCTATTGCTATTTGGAA 566511 Query 50289 TCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA 50340 || || ||||| | || || |||| || | |||| || |||||| ||| Sbjct 566510 CCCATAAAAACAACGCGCTTCTGTAACTTGTATTTCTTGACTAAATCGCTCA 566459 >seq12393 Length=14882 Score = 91.5 bits (100), Expect = 2e-13 Identities = 96/125 (77%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 || ||||| || |||||||| || || || ||||||||||| || || || ||| || Sbjct 894 ATCTCAGTACAAAGGTTACTGCATTTTATTGTTCCTAAATTCTGATGGTTGGATTTTCTG 953 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT- 79787 ||||| ||||| ||||| || ||| | || ||||||||||| |||| | ||| || || Sbjct 954 TTACAAGCATCTTTATACAGCATGTATGGTGTACCAGTTTCTGTCTGTGCTTCAATGATA 1013 Query 79788 CGCTT 79792 ||||| Sbjct 1014 CGCTT 1018 >seq34416 Length=2095 Score = 86.0 bits (94), Expect = 9e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 80400 CTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTG 80459 ||||||||| ||| ||||| | ||||||||||| || | ||| | |||||||||||| Sbjct 1727 CTCAATAGCGCCTTCAATATCGCTGTGATGAATTCCAACAGAGACTCTCATTAACATGTG 1668 Query 80460 CTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGT 80516 ||||| | |||| | | || ||||||||||||||| || || |||| | ||| Sbjct 1667 TTGAGGACGTTCAGCAACTTTACCATTTATTTTCAACAAATATGACCTTTCAAGAGT 1611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717782891156800