Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3179 219 4e-52 seq51641 93.3 4e-14 seq14835 87.8 2e-12 >seq3179 Length=6207 Score = 219 bits (242), Expect = 4e-52 Identities = 604/907 (67%), Gaps = 38/907 (4%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||| ||| |||||||||| ||||||| |||| || || ||||||| ||| Sbjct 3071 GACATCACACCCGCTTTCTGATATTCACCAACTCTTCTTTCGAAAAAAATAGTTTTTCCT 3130 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACA--TAAACACTTTATCAC 13683 || | ||| || | ||||| |||| || ||||| |||| | | | ||||| | Sbjct 3131 TCGATTGAGATCATATCCATGAAATGGAACGGATTG--TGACTGTTGTATATCTTATCGC 3188 Query 13684 AACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC 13743 | | ||||| | | | |||||| ||||| || ||||||||||| ||||| | | Sbjct 3189 AGTCAAGTTCCAGCAACAGTCTATCGGCAATGAATTCAATATATTGCGACATCAGTTTTG 3248 Query 13744 AATTCATACCTATTA-GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGAC 13802 || || || || | || | | || | || | ||||| |||||||| || Sbjct 3249 CGTTAATTCCAATCAAGTCCGTCGGTAAAGCTTCTG-TCAAAAACTCTTTTTCAATCCGG 3307 Query 13803 ACAGCCTCTTTTATAATAATTGT-AATAATCT-CATTAGAAGGAGGATATTTTAGA---T 13857 || || || | ||||| ||| ||| | | | ||| | || | || | | | Sbjct 3308 ACTGCTTCATCAATAAT--TTGACAATGTTTTTCTTTACACGGC---TTGTTAACAATTT 3362 Query 13858 GTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGT 13917 ||| || || ||||| |||||||| ||||| | || ||||| ||| ||||||||| | Sbjct 3363 TTTTCAACATCAAACATGCAAAATCGCAATGTAAACCTTCATCCCTAGAAATAAGTTCAT 3422 Query 13918 TTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATG 13977 ||||||| || || || | | | ||| | || ||| ||||||||| || |||||| Sbjct 3423 TTGAAAAAGTCAAACCGTGTAAAATACCTTTTGTTCTTAGCCAAAATATAGCGCCAAATG 3482 Query 13978 ACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATG 14037 | || ||||| ||||| || ||||| || || || |||| | || || || | | | Sbjct 3483 AACCCGAAAAAAATATACCTTCAACGGCCGCGAAAGCTACAATACGCTCACCGTAGGTGG 3542 Query 14038 CTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTG 14097 | | ||| ||||| ||| ||||||| | |||| | | | | || Sbjct 3543 CGTCCGA---CGAGATCCAATTTAAAGCCCATGTGGCCTTTTGTCCGACAGTCGGAAATG 3599 Query 14098 TTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAA 14157 ||||||| || || |||| || || | | | |||||| || ||||| | Sbjct 3600 TTTCAATTGCGTTGAATAGTCGACGTTTTTCAATGGGATCACGAATGTACGTTTCAATTA 3659 Query 14158 GTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATC 14217 | |||||||||||| ||||| | ||||||||| ||| | ||||| || || || Sbjct 3660 ACAGGCTATACATTTCCGAGTGCACGTTTTCCATCGCTTTTTGAAACGAGTAGAAAAATA 3719 Query 14218 TAGCTTCCG--ACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14275 ||||||||| ||| || | || || | || | | ||||||| | ||| || Sbjct 3720 TAGCTTCCGGTACC--TGGATATCA-AGCAGAAAAGA--GTCTAAATTTTTAGCAACAAT 3774 Query 14276 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAA--GTATTGCTCTTCATTG 14333 |||||||||| ||||||||||||||||| | | |||||| | || | || || Sbjct 3775 TCCATCACTAGTGGCAAAAAATGCCAATATATGTGAAATAAAATGCCTTTCACT--ATCT 3832 Query 14334 TTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14393 ||||| ||| |||| ||| ||||| ||||| ||||| ||||| || || |||| | Sbjct 3833 TTGAGATTTGTCCAGTCGATGAAATCTTTAGATAGATCAACTTCCTCCACACTCCACGA- 3891 Query 14394 CTAGCGACA---GC--TTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAA 14448 | |||| || |||||||||||| | |||||| || | |||| ||| ||||||| Sbjct 3892 --TGAGACAAGTGCTTTTTTTTATACATGATCCATATATCATGATATTTTATTGGAAAAA 3949 Query 14449 CTACAAA 14455 |||||| Sbjct 3950 TTACAAA 3956 >seq51641 Length=269637 Score = 93.3 bits (102), Expect = 4e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||| ||||| || | ||||| || ||||||||||| || || |||||||| ||||| || Sbjct 56653 TTTCTGATACTCCCCGACTCTCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGCGATATGTT 56594 Query 13640 TTCCATAAAATCAAATGGATT 13660 ||||||||||||||||||||| Sbjct 56593 TTCCATAAAATCAAATGGATT 56573 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/140 (75%), Gaps = 6/140 (4%) Strand=Plus/Minus Query 13949 tttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGC 14008 |||||| ||||| ||||||| ||||| | || |||||||| ||||| || |||||||| Sbjct 49179 TTTTTTGAACCAGAATATTGATGCAAAAGCTCCTGAAAAGAAGATTCCTTCCACTGCAGC 49120 Query 14009 AAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA---TATCCATTTTCTAGC 14065 ||| || | | || ||| ||||| |||| | | | ||| ||||| | | |||| Sbjct 49119 AAATGCCACAAGTCTTTCACCAAA-ACTGCTCTCT--TCCGACTGGATCCACTCTATAGC 49063 Query 14066 CCATTCAGAtttttttttAA 14085 ||| |||| ||||||||||| Sbjct 49062 CCAATCAGCTTTTTTTTTAA 49043 >seq14835 Length=167919 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 121072 TTATGTACCTGGAAAAAGAGGTTGGTTAAAGATGAAGAAGGATTACTTAGATGATGGATC 121131 ||||| ||| |||||||| |||||| ||| |||| ||||||||||||| ||| || | Sbjct 36975 TTATGAACCAGGAAAAAGGCATTGGTTGAAGGTGAAAAAGGATTACTTAGCTGAGGGGGC 37034 Query 121132 CATGGCAGATTCTGCAGACTTAGTAGTTTTAGG 121164 |||||| ||| ||||||| ||||| || |||| Sbjct 37035 CATGGCTGATACTGCAGATTTAGTTGTACTAGG 37067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479403464008000