Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3179 233 2e-56 seq51641 93.3 4e-14 seq1 87.8 2e-12 seq14835 82.4 7e-11 >seq3179 Length=6207 Score = 233 bits (258), Expect = 2e-56 Identities = 608/910 (67%), Gaps = 44/910 (5%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||| ||| |||||||||| ||||||| |||| ||||| ||||||| ||| Sbjct 3071 GACATCACACCCGCTTTCTGATATTCACCAACTCTTCTTTCGAAAAAAATAGTTTTTCCT 3130 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACA--TAAACACTTTATCAC 13471 || | ||| || | ||||| |||| ||| ||||| |||| | | | ||||| | Sbjct 3131 TCGATTGAGATCATATCCATGAAATGGAACGGATTG--TGACTGTTGTATATCTTATCGC 3188 Query 13472 AACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC 13531 | | ||||| | || | |||||| ||||| || ||||||||||| ||||| | | Sbjct 3189 AGTCAAGTTCCAGCAACAGTCTATCGGCAATGAATTCAATATATTGCGACATCAGTTTTG 3248 Query 13532 AATTCATACCTATTA-GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGAC 13590 || || || || | || | | || | | || ||||| |||||||| || Sbjct 3249 CGTTAATTCCAATCAAGTCCGTCGGTAAAGCTTCT-GTCAAAAACTCTTTTTCAATCCGG 3307 Query 13591 ACAGCCTCGTTTATAATAATCTTAATAATGT----CATTAGAAGGAGGATATTTTAGA-- 13644 || || || | ||||| || | ||||| | ||| | || | || | | Sbjct 3308 ACTGCTTCATCAATAAT----TTGACAATGTTTTTCTTTACACGGC---TTGTTAACAAT 3360 Query 13645 -TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703 | ||| || || ||||| |||||||| ||||| | || ||||| ||| ||||||||| Sbjct 3361 TTTTTTCAACATCAAACATGCAAAATCGCAATGTAAACCTTCATCCCTAGAAATAAGTTC 3420 Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763 |||||||| || || || | | | ||| | || ||| ||||||||| || | || Sbjct 3421 ATTTGAAAAAGTCAAACCGTGTAAAATACCTTTTGTTCTTAGCCAAAATATAGCGCCAAA 3480 Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823 ||| || ||||| ||||| || ||||| || || || |||| | || || || | | Sbjct 3481 TGAACCCGAAAAAAATATACCTTCAACGGCCGCGAAAGCTACAATACGCTCACCGTAGGT 3540 Query 13824 TGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT 13883 || | || ||||| ||| ||||||| | |||| | | | | Sbjct 3541 GGCGTCCGAC---GAGATCCAATTTAAAGCCCATGTGGCCTTTTGTCCGACAGTCGGAAA 3597 Query 13884 TGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 13943 |||||| ||||| ||||||| | || || | | | |||||| || ||||| Sbjct 3598 TGTTTCAATTGCGTTGAATAGTCGACGTTTTTCAATGGGATCACGAATGTACGTTTCAAT 3657 Query 13944 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003 | | |||||||||||| ||||| | |||||| || ||| | ||||| || ||| | Sbjct 3658 TAACAGGCTATACATTTCCGAGTGCACGTTTTCCATCGCTTTTTGAAACGAGTAGAAAAA 3717 Query 14004 TCTAGCTTCTG--ACCATTGTACCTCCGAGTA-AAATCTTTCTGCCAAGTTTTCATTAAC 14060 | ||||||| | ||| || | || || | ||| ||| || |||| | ||| Sbjct 3718 TATAGCTTCCGGTACC--TGGATATCA-AGCAGAAAAGAGTCT---AAATTTTTAGCAAC 3771 Query 14061 AATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAA--GTATTGCTCTTCA 14118 ||| |||||||||| ||||||||||||||||| | | |||||| | || | || | Sbjct 3772 AATTCCATCACTAGTGGCAAAAAATGCCAATATATGTGAAATAAAATGCCTTTCACT--A 3829 Query 14119 TTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAA 14178 | ||||| ||| |||| ||| ||||| ||||| ||||| ||||| || || |||| Sbjct 3830 TCTTTGAGATTTGTCCAGTCGATGAAATCTTTAGATAGATCAACTTCCTCCACACTCCAC 3889 Query 14179 AAACTAGCGACA---GC--TTTTTTATACATTACCCATATTTCTTTATATAATATAGGAA 14233 | | |||| || |||||||||||| | |||||| || | |||| ||| |||| Sbjct 3890 GA---TGAGACAAGTGCTTTTTTTTATACATGATCCATATATCATGATATTTTATTGGAA 3946 Query 14234 AAACTACAAA 14243 ||| |||||| Sbjct 3947 AAATTACAAA 3956 >seq51641 Length=269637 Score = 93.3 bits (102), Expect = 4e-14 Identities = 106/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 13737 tttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGC 13796 |||||| ||||| ||||||| || || | ||| |||||||| ||||| || |||||||| Sbjct 49179 TTTTTTGAACCAGAATATTGATGCAAAAGCTCCTGAAAAGAAGATTCCTTCCACTGCAGC 49120 Query 13797 AAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTT--GTTTGATATCCATTTTCTAGCC 13854 ||| || | |||| ||| ||||| |||| | || | || ||||| | | ||||| Sbjct 49119 AAATGCCACAAGTCTTTCACCAAA-ACTGCTCTCTTCCGACTG-GATCCACTCTATAGCC 49062 Query 13855 CATTCAGAtttttttttAA 13873 || |||| ||||||||||| Sbjct 49061 CAATCAGCTTTTTTTTTAA 49043 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| ||||| || | ||||| || ||||| ||||| || || |||||||| ||||| || Sbjct 56653 TTTCTGATACTCCCCGACTCTCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGCGATATGTT 56594 Query 13428 TTCCATAAAATCGAATGGATT 13448 |||||||||||| |||||||| Sbjct 56593 TTCCATAAAATCAAATGGATT 56573 >seq1 Length=778493 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| || |||||||| | ||| | ||||||||||||||| || || ||| Sbjct 568330 GACATTACTCCCATCTTCTGATATTCTCCAACACGTTTTTCAAAAAAGTTTGTCTTTCCT 568271 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 || ||||| || |||||||| || || || |||||| Sbjct 568270 TCAAGTGAAATGTTTTCCATGAAGTCAAAGGGATTT 568235 >seq14835 Length=167919 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 120786 TTATGTACCTGGAAAAAGAGGTTGGTTAAAGATGAAGAAGGATTACTTAAATGATGGATC 120845 ||||| ||| |||||||| |||||| ||| |||| |||||||||||| ||| || | Sbjct 36975 TTATGAACCAGGAAAAAGGCATTGGTTGAAGGTGAAAAAGGATTACTTAGCTGAGGGGGC 37034 Query 120846 CATGGCAGATTCTGCAGACTTAGTAGTTTTAGG 120878 |||||| ||| ||||||| ||||| || |||| Sbjct 37035 CATGGCTGATACTGCAGATTTAGTTGTACTAGG 37067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478265034676800