Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3179 280 2e-70 seq51498 132 6e-26 seq51641 107 3e-18 seq43701 105 9e-18 seq1 104 3e-17 seq12393 91.5 2e-13 >seq3179 Length=6207 Score = 280 bits (310), Expect = 2e-70 Identities = 618/914 (68%), Gaps = 17/914 (2%) Strand=Plus/Plus Query 41740 AAAATGATTGTCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTC 41799 |||||||| ||| || | ||||| || ||| ||| || |||||||| || | | |||| Sbjct 3052 AAAATGATGGTCATCCGGTGACATCACACCCGCTTTCTGATATTCACCAACTCTTCTTTC 3111 Query 41800 GAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAAC 41859 ||||||| |||| |||||||| | ||| || | |||||||||| ||||||||| | Sbjct 3112 GAAAAAAATAGTTTTTCCTTCGATTGAGATCATATCCATGAAATGGAACGGATTGTGACT 3171 Query 41860 ATTATAAAtttttttAAATCCCAATT-CAGAAATCAATCTATCTGCGATGAATTCTATAT 41918 || || || || | | | | || ||| || || |||||| || |||||||| |||| Sbjct 3172 GTTGTATATCTTATCGCAGTCAAGTTCCAGCAA-CAGTCTATCGGCAATGAATTCAATAT 3230 Query 41919 ATGTTTTCATCATTTCACAATTCATTCCTAT-AAGTTTAACTGGAAGAGCCACAGTAAGA 41977 || ||||| || || ||||| || |||| | || | ||| | || | | Sbjct 3231 ATTGCGACATCAGTTTTGCGTTAATTCCAATCAAGTCCGTC-GGTAAAGCTTCTGTCAAA 3289 Query 41978 AATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG- 42036 || |||| |||||| ||| || || ||||| | | |||||| || ||| Sbjct 3290 AACTCTTTTTCAATCCGGACTGCTTCATCAATAATTTGACAATGTTTTTCTTTACACGGC 3349 Query 42037 -TGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTC 42095 || ||||| | ||| |||||||||||||| |||||||| || | ||| ||||| | Sbjct 3350 TTGTTAACAAT--TTTTTTCAACATCAAACATGCAAAATCGCAATGTAAACCTTCATCCC 3407 Query 42096 TACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAA 42155 || ||| | ||| || ||||| || | ||| | | | || || | ||||||| Sbjct 3408 TAGAAATAAGTTCATTTGAAAAAGTCAAACCGTGTAAAATACCTTTTGTTCTTAGCCAAA 3467 Query 42156 ATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTC 42215 |||||| ||||||| || ||||| || || ||||| || ||||| || || | || | Sbjct 3468 ATATAGCGCCAAATGAACCCGAAAAAAATATACCTTCAACGGCCGCGAAAGCTACAATAC 3527 Query 42216 TCTCTCCATAACCGGC-ACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTT 42274 ||| || || ||| | | | | ||||| ||| |||||| |||||| | | Sbjct 3528 GCTCACCGTAGGTGGCGTCCGACGAG-ATCCAATTTAAAGCCCATGTGGCCTTTTGTCCG 3586 Query 42275 ACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA 42334 ||| || | ||||| || || || || || ||||||| | ||| || Sbjct 3587 ACAGTCGGAAATGTTTCAATTGCGTTGAATAGTCGACGTTTTTCAATGGGATCACGAATG 3646 Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || || || || || || ||||||||||| || || | |||||| || || | ||||| Sbjct 3647 TACGTTTCAATTAACAGGCTATACATTTCCGAGTGCACGTTTTCCATCGCTTTTTGAAAC 3706 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC-TGTACAAAATCGTTCAGCTAAATT 42453 ||||||| || | || || | ||||| | || | | |||| || ||||||| Sbjct 3707 GAGTAGAAAAATATAGCTTCCGGTACCTGGATATCAAGCAGAAAAGAGT----CTAAATT 3762 Query 42454 TTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 42513 || || ||||| ||||| | |||||||| ||||||| |||| ||||||| | Sbjct 3763 TTTAGCAACAATTCCATCACTAGTGGCAAAAAATGCCAATATATGTGAAATAAAATGCCT 3822 Query 42514 TTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTAC 42573 ||| | | | || |||| || ||| ||||||||||| ||| ||||| || || Sbjct 3823 TTCACTATCTTTGAGATTTGTCCAGTCGATGAAATCTTTAGATAGATCAACTTCCTCCAC 3882 Query 42574 CGTCCAAAATGATGCTTCTGC--CTTTTTATACATATTCCAGATATCATGATATTGAATT 42631 |||| |||| | ||| ||||||||||| |||| ||||||||||||| ||| Sbjct 3883 ACTCCACGATGAGACAAGTGCTTTTTTTTATACATGATCCATATATCATGATATTTTATT 3942 Query 42632 GGGAAAATAACAAA 42645 || ||||| ||||| Sbjct 3943 GGAAAAATTACAAA 3956 >seq51498 Length=41259 Score = 132 bits (146), Expect = 6e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 ||| || || | |||||| ||| | | |||||||||||||| ||||||||||||| Sbjct 9118 TTCAAATTCTTTTCCCCAGACATCATGAAGACCAGGACATTCATTTGGACACATCAATGT 9059 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 72062 ||| ||| | | || |||||||| || |||||||||||||| ||||| ||| Sbjct 9058 CCAATCTTGGTTGGTCTCAACACGTTTCATGAACAGATCAGGAATCCACAGAGCATAAAA 8999 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 |||||||| | ||| || || || |||||||| || || ||| ||| | ||| | | Sbjct 8998 AAGATCTCTTGCTCTTTGTTCTTCCTTTCCTGTGTTTTTCTTAGCATCCAAGAAATCAAA 8939 Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGC 72155 || || | |||||| ||||||||||| ||||| Sbjct 8938 GATGTCTGCATGCCATGGTTCCAAGTAAATGGC 8906 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 ||||| | | || |||||||| || ||||| |||| | || || || || ||||| | Sbjct 13563 TCCATGCAAAGAAGTGCATACTGGTCAGTTTTCCATAGTTTGGCTCTGCAATATGAATGT 13504 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| |||||||||||||| ||||| ||||| || ||||||||||| | | || ||| Sbjct 13503 TCAATGACTGACTTTGATCAATGAATGCTCCTCTATCTGCAGCCATGATCAAAATATTCT 13444 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | |||| | || | | ||| |||| ||||||| Sbjct 13443 TCTGAGAGATTTCCCACACAGTTCTGTACAGTTTCTTGATATGATCTGGAA 13393 Score = 100 bits (110), Expect = 4e-16 Identities = 131/179 (73%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 71751 AATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 71810 ||| ||||| ||||||||||| || || || ||||||||||| || || || || | Sbjct 10080 AATCTCAGTACAAAGATTACTGCATTTTATTGTTCCTAAATTCTGATGGTTGGATTTCCT 10021 Query 71811 GTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 71870 |||||| ||||| ||||| || || | || |||||||||||| |||| | ||| ||||| Sbjct 10020 GTTACAAGCATCTTTATACAGCATGTATGGTGTACCAGTTTCAGTCTGTGCTTCAATAAT 9961 Query 71871 CGCTTTCCAGA-CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTAT 71928 || | ||| | | ||| | || || || | || | | | |||||||| |||||| Sbjct 9960 TGCATACCACAGCAACT-GGGCTTTGATGGTCTTGGTACCTTTATTTTCTCTCTCGTAT 9903 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| || || | | || ||||| | ||||| || || ||| Sbjct 12509 ACCTGAAATTCTCCTGACAAGACCCTTCTTGAATAGATATTGGTTGTATAAGGCTCAACT 12450 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 || ||||| || |||| || || |||||||| || || ||||||||||| | |||| | Sbjct 12449 GATTCATTGTTACCCAGTATCTGTGCAGTTGAAGCTGTTGGCATAGGTGCTAATAATAAA 12390 Query 71263 CTATTTCTAAGACCATGTG 71281 ||||| | | |||||||| Sbjct 12389 CTATTACGTAAACCATGTG 12371 >seq51641 Length=269637 Score = 107 bits (118), Expect = 3e-18 Identities = 112/145 (77%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 42143 TTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCA 42202 ||||| | ||| ||||| || ||||| | ||| ||||||||||||||||| ||||| ||| Sbjct 49178 TTTTTGAACCAGAATATTGATGCAAAAGCTCCTGAAAAGAAGATTCCTTCCACTGCAGCA 49119 Query 42203 AAGGCAATAAGTCTCTCTCCATAACCG-GCACTGTC--ATGTATCCACTTTTGAGCCCAA 42259 || || | |||||| || ||| ||| | | || | || ||||||| | ||||||| Sbjct 49118 AATGCCACAAGTCTTTCACCAAAACTGCTCTCTTCCGACTGGATCCACTCTATAGCCCAA 49059 Query 42260 TCGGCCTTCTTTTTTACACAAGGCA 42284 || || || ||||| |||||||||| Sbjct 49058 TCAGCTTTTTTTTTAACACAAGGCA 49034 >seq43701 Length=19211 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 ||||| | | || |||||||| || ||||| |||| | || || || || ||||| | Sbjct 6107 TCCATGCAAAGAAGTGCATACTGGTCAGTTTTCCATAGTTTGGCTCTGCAATATGAATGT 6166 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| |||||||||||||| ||||| ||||| || ||||||||||| | | || ||| Sbjct 6167 TCAATGACTGACTTTGATCAATGAATGCTCCTCTATCTGCAGCCATGATCAAAATATTCT 6226 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | |||| | || | | ||| |||| ||||||| Sbjct 6227 TCTGAGAGATTTCCCACACAGTTCTGTACAGTTTCTTGATATGATCTGGAA 6277 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||| || || || || | | || ||||| | ||||| || || ||| Sbjct 7276 ACCTGAAATTCTTTTGATAAAACCCTTCTTGAATAGATATTGGTTGTATAAGGCTCAACT 7335 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 || ||||| || |||| || || |||||||| || || ||||||||||| | |||| | Sbjct 7336 GATTCATTGTTACCCAGTATCTGTGCAGTTGAAGCTGTTGGCATAGGTGCTAATAATAAA 7395 Query 71263 CTATTTCTAAGACCATGTG 71281 ||||| | | |||||||| Sbjct 7396 CTATTACGTAAACCATGTG 7414 >seq1 Length=778493 Score = 104 bits (114), Expect = 3e-17 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 42334 ATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAA 42393 ||||||||| ||||||||||| ||||| ||||||||||||||||| || || || || || Sbjct 566570 ATATGTATCAATCAAAAGACTGTACATCTCTGAATGAATGTTTTCTATTGCTATTTGGAA 566511 Query 42394 TCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA 42445 || || ||||| | || || ||||| |||| |||| || |||||| ||| Sbjct 566510 CCCATAAAAACAACGCGCTTCTGTAACTTGTATTTCTTGACTAAATCGCTCA 566459 Score = 104 bits (114), Expect = 3e-17 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| |||||||| || || ||||| || ||||||||||| ||||| || ||||||||| Sbjct 568330 GACATTACTCCCATCTTCTGATATTCTCCAACACGTTTTTCAAAAAAGTTTGTCTTTCCT 568271 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 || | ||| || ||||||||||| ||||| ||||| Sbjct 568270 TCAAGTGAAATGTTTTCCATGAAGTCAAAGGGATT 568236 >seq12393 Length=14882 Score = 91.5 bits (100), Expect = 2e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 71751 AATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 71810 ||| ||||| ||||| ||||| || || || ||||||||||| || || || ||| | Sbjct 893 AATCTCAGTACAAAGGTTACTGCATTTTATTGTTCCTAAATTCTGATGGTTGGATTTTCT 952 Query 71811 GTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 71870 |||||| ||||| ||||| || || | || ||||||||||| |||| | ||| || || Sbjct 953 GTTACAAGCATCTTTATACAGCATGTATGGTGTACCAGTTTCTGTCTGTGCTTCAATGAT 1012 Query 71871 -CGCTTTCCAGACGACTCGAGCCTTTATTATATT 71903 ||| ||||| | || | || || ||| |||| Sbjct 1013 ACGC-TTCCACAGTTCTTGTGCTTTAATTGTATT 1045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670685174331200