Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq3179 221 1e-52 seq1 91.5 1e-13 >seq3179 Length=6207 Score = 221 bits (244), Expect = 1e-52 Identities = 588/884 (67%), Gaps = 32/884 (4%) Strand=Plus/Plus Query 12844 TGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCC 12903 |||||| ||| | ||| |||||||| | ||||||| |||| ||||| | |||||||| Sbjct 3070 TGACATCACACCCGCTTTCTGATATTCACCAACTCTTCTTTCGAAAAAAATAGTTTTTCC 3129 Query 12904 TTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTA-- 12961 ||| | || || | ||||| |||| ||| ||||| | || | |||| | ||| Sbjct 3130 TTCGATTGAGATCATATCCATGAAATGGAACGGATTGTG---ACTGTTGTATATCTTATC 3186 Query 12962 -CACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 || | | ||| || |||| ||| || |||| || || || || || ||| | | Sbjct 3187 GCAGTCAAGTTCCAGCAACAGTCTATCGGCAATGAATTCAATATATTGCGACATCAGTTT 3246 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080 ||| ||||| || || | || | ||||||||| ||||| | |||||| || Sbjct 3247 TGCGTTAATTCCAATCAAGTCCGTCGGTAAAGCTTCTGTCAAAAACTCTTTTTCAATCCG 3306 Query 13081 AACTGCTTCG---ATAACTATGTCTCTTATTACGTTCTCTA-ATGGAGGATTTGATAGAT 13136 |||||||| |||| | || | | || |||| || | || || | | Sbjct 3307 GACTGCTTCATCAATAATT-TGACAATGTTT---TTCTTTACACGGCTTGTTAACAATTT 3362 Query 13137 GCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGT 13196 || ||||||| |||||||||||| || || || |||||||| ||| || || || | Sbjct 3363 TTTTCAACATCAAACATGCAAAATCGCAATGTAAACCTTCATCCCTAGAAATAAGTTCAT 3422 Query 13197 TTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACG 13256 ||||||| || | ||| | | || ||| | || | | |||||||||||| |||| | Sbjct 3423 TTGAAAAAGTCAAACCGTGTAAAATACCTTTTGTTCTTAGCCAAAATATAGCGCCAAATG 3482 Query 13257 AACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTAC 13316 |||||||||||||||| |||||||| || || || |||| | | ||||| || | Sbjct 3483 AACCCGAAAAAAATATACCTTCAACGGCCGCGAAAGCTACAATACGCTCACCGTAGG--- 3539 Query 13317 TATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGT-TCATA 13375 | | | ||||| ||| ||||| | || |||||| | |||| | | Sbjct 3540 TGGCGTCCGACGAGATCCAATTTAAAGCCCATGTGGCCTTTTGTCCGA--CAGTCGGAAA 3597 Query 13376 T-TTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTAT 13434 | |||| |||||||| |||| | |||||| | || ||| || || || || Sbjct 3598 TGTTTCAATTGCGTTGAATAGTCGACGTTTTTCAATGGGATCACGAATGTACGTTTCAAT 3657 Query 13435 CAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCA-TAAAAAC 13493 || | |||||||||||| || || | |||||||||||| ||| ||||| | || ||| Sbjct 3658 TAACAGGCTATACATTTCCGAGTGCACGTTTTCCATCGCT-TTTTGAAACGAGTAGAAAA 3716 Query 13494 ATCTAGCCTCTGATACCTGAACTTC--GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAAC 13551 || |||| || | |||||| | || | || ||| | |||| |||| ||| Sbjct 3717 ATATAGCTTCCGGTACCTGGATATCAAGCAGAAAAGAGT-----CTAAATTTTTAGCAAC 3771 Query 13552 TATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC 13611 || || ||||||| |||||||| || | ||| || |||||| | |||| | || Sbjct 3772 AATTCCATCACTAGTGGCAAAAAATGCCAATATATGTGAAATAAAATGCCTTTCACTATC 3831 Query 13612 TGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAA 13671 | | ||| ||| || |||||||| |||| ||| || ||||| || |||| | Sbjct 3832 TTTGAGATTTGTCCAGTCGATGAAATCTTTAGATAGATCAACTTCCTCCACACTCCACGA 3891 Query 13672 AGAAGCAACAGC--CTTCTTATACATCATCCATATATCCTTATA 13713 || ||| || || |||||||| ||||||||||| | ||| Sbjct 3892 TGAGACAAGTGCTTTTTTTTATACATGATCCATATATCATGATA 3935 >seq1 Length=778493 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 12971 TCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATT 13030 || |||| | |||||| |||||||||||||||||||||||||| | ||| ||||||| Sbjct 567622 TCAAGTAGAAGTCTGTCCGCAACAAACTCTATGTACTGTTTCATGAGATCTTTGTTCATT 567563 Query 13031 CCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCG 13090 || || | | || || | || || |||| ||| | || ||| || | ||| || || Sbjct 567562 CCAATCAGTGACACCGGTAGGGCATCAGTTAGAAATTCTTGTTCAATCTTAACGGCATCT 567503 Query 13091 ATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATA 13150 | | || || ||||| | || | |||| ||||| || || | ||||||| | Sbjct 567502 CTGATAATTTCAATTATTCTCTGCTGTGATGGTTTATTTGTAAGGTGACTGAACATCAAA 567443 Query 13151 CATGCAAAATCACAGTGCAATCC 13173 || ||||| || || || || || Sbjct 567442 CAGGCAAAGTCGCAATGTAAACC 567420 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 12844 TGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCC 12903 |||||| || ||| || |||||||| | ||| | |||||||||||||||||| ||||| Sbjct 568331 TGACATTACTCCCATCTTCTGATATTCTCCAACACGTTTTTCAAAAAAGTTTGTCTTTCC 568272 Query 12904 TTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT 12941 ||| | ||||| |||||||| || || || ||||||| Sbjct 568271 TTCAAGTGAAATGTTTTCCATGAAGTCAAAGGGATTTT 568234 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 ||||| ||||| ||||| | || ||||| ||||||||||| ||||| || ||||||||| Sbjct 566572 ATATATGTATCAATCAAAAGACTGTACATCTCTGAATGAATGTTTTCTATTGCTATTTGG 566513 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 || ||||||||||| | || |||| || || | ||| Sbjct 566512 AACCCATAAAAACAACGCGCTTCTGTAACTTGTATTTC 566475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430698129396240