Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq14214 143 9e-30 >seq14214 Length=808 Score = 143 bits (158), Expect = 9e-30 Identities = 293/429 (68%), Gaps = 16/429 (4%) Strand=Plus/Minus Query 17338 GATAAGTGGGCGCTGTACGCAATCGCGCGTTACTGCGACGAACTCGTGTCCGACGGGAAG 17397 || ||||||| |||||| |||| || || |||||||| | || ||||| Sbjct 794 GACAAGTGGGGCCTGTACCAGATCGGCCGCTATTGCGACGAGATGGTCGATGACGGCTTC 735 Query 17398 GGCGGCAAGGAGCCGTGCTTCACCTGCAAC---TGCGTGCTTCAGACGCGCGCGGACGCA 17454 ||||| ||||| ||| |||||||||||||| | | ||| ||| || || ||||| Sbjct 734 GGCGGAAAGGAACCGCGCTTCACCTGCAACGTCTACCTGCAACAGGCG---GCCGACGCC 678 Query 17455 TTCAAGGTGGTACAGGATCTCGCGAGCGTCTTTCGCGGCATTTCGTACTGGGGCGCCGGG 17514 | | |||||| ||||| |||| | | || |||||||| | || |||| | || Sbjct 677 TACCGGGTGGTGCAGGACTTCGCCTCCATTTTCCGCGGCATGGCTTATTGGGCCAACGCC 618 Query 17515 TCGGTGGTCGCGTCGGCCGATATGCCGTCCGATCCGGTCTACCTGTACACGGCCGCGAAT 17574 | ||| |||| |||||||| |||||| ||||||||||||| || | || | || || Sbjct 617 GCCGTGTTCGCCTCGGCCGACATGCCGGGCGATCCGGTCTACACGTTCTCGTCGGCCAAC 558 Query 17575 GTCGTCGGTGGTTCATTCAAGTACGTCGGCAGCGAACGCAAGACGCGTTACACGGTCGCG 17634 || |||| ||| ||||| ||||||||| | | | ||||| ||||| || ||| Sbjct 557 GTGGTCGATGGCCGCTTCAACTACGTCGGCTCGGCGCTGACCACGCGCTACACCGTGGCG 498 Query 17635 CTCGTCAGCTACAACGA----TCCGACGAACCAGT-ACAAGCAAGCTGTCGAGCCCGTGC 17689 || || || ||||| ||||| || || | || ||| |||||| ||| Sbjct 497 CTGGTGTCCTGGAACGACATGTCCGA--AATGGGTCGCCAG-AAG--GTCGAGTACGTCG 443 Query 17690 AGGACGACGACGGGATCGCGCGATATGGCGTCATCAAGACGGAGGTCACGGCGTTCGGCT 17749 || || ||| || |||||||| ||||| || || ||| || || | |||||||| Sbjct 442 AGAACCGCGAAGGCATCGCGCGCTATGGAATCCAGCAGGTGGAAGTGACCGGGTTCGGCT 383 Query 17750 GCACGTCGC 17758 |||| |||| Sbjct 382 GCACCTCGC 374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175333644984880