Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccoglossus_20kowalevskii_20[refseq_20GCF_5F000003605.2_202009-09- 09] 54,120 sequences; 775,840,395 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3179 187 6e-42 seq1 105 2e-17 seq24757 100 7e-16 seq14329 98.7 2e-15 seq15880 96.9 8e-15 >seq3179 Length=6207 Score = 187 bits (206), Expect = 6e-42 Identities = 588/897 (66%), Gaps = 18/897 (2%) Strand=Plus/Minus Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAG--GCCGTTG 268760 ||||| || ||||||||| | || ||||||||||| ||||| ||| | || ||| Sbjct 3956 TTTGTAATTTTTCCAATAAAATATCATGATATATGGATCATGTATAAAAAAAAGCACTTG 3897 Query 268761 CTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATT 268820 || | |||| ||| || ||||| ||||| ||| | || || || || |||| |||| Sbjct 3896 TCTCATCGTGGAGTGTGGAGGAAGTTGATCTATCTAAAGATTTCATCGACTGGACAAATC 3837 Query 268821 TAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATG 268880 | ||| ||||| ||||| || |||| | || |||||||| |||||||| Sbjct 3836 TCAAAGATAGTGAAAGGCATTTTATTTCACATATATTGGCATTTTTTGCCACTAGTGATG 3777 Query 268881 GTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCA 268940 | || ||| ||||| ||| ||||| | || | ||| | || ||||| | Sbjct 3776 GAATTGTTGCTAAAAATTTAGACTCTT--TTCTG-CTTGATATCCAGGTACCGGAAGCTA 3720 Query 268941 GATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTAT 269000 || ||| ||| || || | ||| || ||||| | || || || ||||| || || | Sbjct 3719 TATTTTTCTACTCGTTTCAAAAAGCGATGGAAAACGTGCACTCGGAAATGTATAGCCTGT 3660 Query 269001 TAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATGAGAA 269060 |||| || || || || |||| || ||||| ||||||| | || || Sbjct 3659 TAATTGAAACGTACATTCGTGATCCCATTGAAAAACGTCGACTATTCAACGCAATTGAAA 3600 Query 269061 CTATG--GACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAG-CG 269117 | | |||||| || |||| | ||||||| | || ||||| || | || Sbjct 3599 CATTTCCGACTGTCGGACAAAAGG--CCACATGGGCTTTAAATTGGATCT-CGTCGGACG 3543 Query 269118 CGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGT 269177 | | ||||| || | | || ||||| || || || ||||||||||| |||||||| | Sbjct 3542 CCACCTACGGTGAGCGTATTGTAGCTTTCGCGGCCGTTGAAGGTATATTTTTTTCGGGTT 3483 Query 269178 CTTTTGCCGCTATCTTTTGGTTGAAGAA-AAGAGGCCTTATGCCAGGATTAACTTTCTCT 269236 | |||| |||||| |||||| | ||||| || ||| || | | || || ||||| || Sbjct 3482 CATTTGGCGCTATATTTTGGCT-AAGAACAAAAGGTATTTTACACGGTTTGACTTTTTCA 3424 Query 269237 AACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACT 269296 || ||| | || ||||| ||||||||||| ||||| || || ||||| | || | Sbjct 3423 AATGAACTTATTTCTAGGGATGAAGGTTTACATTGCGATTTTGCATGTTTGATGTTGAAA 3364 Query 269297 AATTATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCAGCTGTT 269356 || | || |||| || | | |||| | | | ||||||| ||| ||| || Sbjct 3363 AAAATTGTT---AACAAGCCGTGTAAAGAAAAACATTGTCAAATTATTGATGAAGCAGTC 3307 Query 269357 TCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGC 269416 | |||| ||| ||| | || |||||| || | | || | || || || || || Sbjct 3306 CGGATTGAAAAAGAGTTTTTGACAGAAGCTTTACCGACGGACTTGATTGGAATTAA-CGC 3248 Query 269417 AAATC-GATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGTT 269475 ||| | |||| |||||||| | ||| | | |||||| || || || | | | Sbjct 3247 AAAACTGATGTCGCAATATATTGAATTCATTGCCGATAGACTGTTGCTGGAACTTGACTG 3188 Query 269476 TAGTAAAAAATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGG 269535 ||| | ||| ||| | | |||||||| ||| ||||| | || ||| | ||||| Sbjct 3187 CGATAAGATATACAACAGTCACAATCCGTTCCATTTCATGGATATGATCTCAATCGAAGG 3128 Query 269536 TAAGGCTAATTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTC 269592 || ||| ||| ||||| | | || || | ||||||||| |||||| ||||| Sbjct 3127 AAAAACTATTTTTTTCGAAAGAAGAGTTGGTGAATATCAGAAAGCGGGTGTGATGTC 3071 >seq1 Length=778493 Score = 105 bits (116), Expect = 2e-17 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 268914 GTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAA 268973 ||||||| |||| || | ||||| | |||||||| || ||||| ||||| ||||||| Sbjct 566470 GTCAAGAAATACAAGTTACAGAAGCGCGTTGTTTTTATGGGTTCCAAATAGCAATAGAAA 566529 Query 268974 ATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 | ||||||||||||||||||||||| || || ||||| ||||| Sbjct 566530 ACATTCATTCAGAGATGTACAGTCTTTTGATTGATACATATAT 566572 >seq24757 Length=373871 Score = 100 bits (110), Expect = 7e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 ||| |||||||| || || ||||||||||| |||||||| | ||||| ||||| || Sbjct 52707 TATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTTTCAATAGTATCTGATGGTTCAAC 52648 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || ||||| ||||| |||||||| || || |||||||| Sbjct 52647 CTCTAGGGTTATTGTCTTCCCAGTCAGTGTTTTAACGAAGATCTGCAT 52600 >seq14329 Length=486688 Score = 98.7 bits (108), Expect = 2e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||||| |||||| || ||||||||||| ||||| || ||||||| || | || || Sbjct 199964 AAGTACTAAATGTAAGGTTGATTCTTTCTGGATATTGTAATCAGATAACGTACGTCCATC 199905 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 ||| |||||||| || ||||| || | |||||| || || || || |||||| Sbjct 199904 TTCAAGTTGTTTACCGGCAAAGATCAACCTCTGCTGGTCGGGTGGAATTCCT 199853 >seq15880 Length=18522 Score = 96.9 bits (106), Expect = 8e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78487 AGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCAT 78546 ||| || |||||||| ||| | || || || |||||| | |||| || | || || || Sbjct 8757 AGCGTTGTGGTGGTACTATTTTTCCAAGGGTATAGAACTCTTAGACACAGTATTTTTTAT 8698 Query 78547 CCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTT 78606 || || || ||| ||| ||| ||||||| || ||||||||||| |||| || ||||| Sbjct 8697 TCTTCGCAAAAAAAATAACCAACTTAGTTTCCTTCATGTATATCACCATTCAACAATGTT 8638 Query 78607 TACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAA 78649 || ||| | ||||| || | |||||| | || || || ||| Sbjct 8637 TATATTGTGGTGGATTGGAGTCAAATGGGTTGCTGGTGGTCAA 8595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150600005956960